Search results

Global Buffer Overflow in writeBam

Status: Open.

#53 In pachterlab/splitcode;

· sqdshguy opened on Dec 7, 2025

Reverse complement config option seems incompatible with tags from files

Status: Open.

#43 In pachterlab/splitcode;

· clintval opened on Sep 21, 2025

How to trim after, instead of before, extraction

Status: Open.

#40 In pachterlab/splitcode;

· clintval opened on Sep 14, 2025

splitcode to get the read index of matching sequences

Status: Open.

#36 In pachterlab/splitcode;

· BiotechPedro opened on Jul 15, 2025

Test not running to completion on aarch64-linux

bugSomething isn't workingSomething isn't working

Status: Open.

#31 In pachterlab/splitcode;

· zimward opened on Jan 8, 2025

Have --keep be able to output into BAM files rather than FASTQ files

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In pachterlab/splitcode;

· Yenaled opened on Dec 10, 2024

Extract barcodes (sample and UMI) from read names

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In pachterlab/splitcode;

· nh13 opened on Aug 1, 2024

Allow stitching together extraction sequences of different names and allow extraction of final barcode sequence

enhancementNew feature or requestNew feature or request

Status: Open.

#21 In pachterlab/splitcode;

· Yenaled opened on Jul 9, 2024

allow subs to make a substitution to an empty string (i.e. delete the entire sequence)

enhancementNew feature or requestNew feature or request

Status: Open.

#20 In pachterlab/splitcode;

· Yenaled opened on Jul 8, 2024

feature request: support unmapped BAMs as input

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In pachterlab/splitcode;

· znorgaard opened on Jul 3, 2024

Long-read usage

Status: Open.

#16 In pachterlab/splitcode;

· mcortes-lopez opened on Jun 28, 2024

Counting all tag combinations and reads without tags

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In pachterlab/splitcode;

· andreafratton opened on May 3, 2024