Long-read usage

[mcortes-lopez]

I read in Lior's preprint X thread that splitcode would work well with long-reads, do you have any example of how to implement it for this case?
I would like to test it to demultiplex single-cell long-reads based on sample-specific sets of barcodes.

[Yenaled]

Ooh, thanks for checking out splitcode! I don’t have any examples because I’m assuming what you’d see in long reads would be the same as what you’d see in short reads (maybe just being more generous with the error tolerance)? At least that’s what I did when I was working with long read data over a year ago.