Repositories list

• CCLE-Pharmacoset_Snakemake

  Public
  HTML

  •0•1•0•0•Updated Jan 27, 2026Jan 27, 2026

• ICB_Common

  Public
  R

  •0•0•0•0•Updated Dec 23, 2025Dec 23, 2025

• Xevacurate_Snakemake_UHN_Lung

  Public
  Xevaset curation pipeline developed using UHN Lung dataset

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• gdsc-treatmentresponse-snakemake

  Public
  GDSC 1 and 2 into treatmentResponseExperiments

  R

  •0•1•0•0•Updated May 23, 2025May 23, 2025

• ctrpv2-treatmentresponse-snakemake

  Public
  Pipeline to generate TreatmentResponseExperiment from raw data.

  R

  •0•0•0•0•Updated May 23, 2025May 23, 2025

• gcsi-treatmentresponse-snakemake

  Public
  Create TRE for gCSI

  R

  •0•0•0•0•Updated May 22, 2025May 22, 2025

• ccle-treatmentresponse-snakemake

  Public
  Snakemake pipeline to curate and prepare the CCLE drug resonse data only.

  R

  •0•0•0•0•Updated May 22, 2025May 22, 2025

• pharmacogx-gdr-prism-pipeline

  Public
  Pipeline to process the PRISM data through the gDR tools and PharmacoGx

  R

  •0•0•0•1•Updated May 16, 2025May 16, 2025

• DepMap-Snakemake

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• readii-idc-notebooks

  Public
  HTML

  •0•1•1•0•Updated Jan 22, 2025Jan 22, 2025

• TCL38-PharmacoSet_Snakemake

  Public
  R

  •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

• pharmacoset-pipelines-tracker

  Public
  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• RADCURE_radiomics

  Public
  Data processing for the RADCURE radiomics dataset with MultiAssayExperiment

  Jupyter Notebook

  •0•0•2•0•Updated Sep 17, 2024Sep 17, 2024

• 5_snakemake_bioconductor

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• 4_snakemake_download_data

  Public
  Python

  •1•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• 3_snakemake_conda-env

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• 2_snakemake_simple2

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• 1_snakemake_simple

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• PDXE-XevaSet_Scripts

  Public
  R

  •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

• example-Snakemake_Pipeline

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Apr 22, 2024Apr 22, 2024

• CTRP-Pharmacoset_Snakemake

  Public
  R

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• GDSC-Pharmacoset_Snakemake

  Public
  R

  •0•0•5•0•Updated Apr 19, 2024Apr 19, 2024

• gCSI-Pharmacoset_snakemake

  Public
  R

  •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

• UHNBreast_PharmacoSet-Pipeline

  Public
  R

  •0•0•1•0•Updated Mar 18, 2024Mar 18, 2024

• Test_Object-dvc

  Public
  0•0•0•0•Updated Oct 20, 2023Oct 20, 2023

• RADCURE_radiomic_MAE_Test-dvc

  Public
  0•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• RADCURE_radiomic_MAE-dvc

  Public
  0•0•0•0•Updated Sep 10, 2023Sep 10, 2023

• PSet_NCI60-snakemake

  Public
  R

  •0•0•0•0•Updated May 4, 2023May 4, 2023

• PSet_NCI60-dvc

  Public
  0•0•0•0•Updated May 3, 2023May 3, 2023

• Test_Object-snakemake

  Public
  A sample Snakemake pipeline to demonstrate how to integrate a pipeline into ORCESTRA

  R

  •1•0•0•0•Updated Apr 27, 2023Apr 27, 2023