example-Snakemake_Pipeline

Pipeline should from start to finish cover most of what a user needs to build their pipeline

Minimum requirements:

• Should download a file from HTTP
• Should download a file from GS storage (snakemake 7.32.4)
• Should use multiple wildcards
• Should run a python script
• Should run an R script
• Should run a bash script
• Should define resources
• Should use a conda environment (with a post script)
• Should use a docker container

DAG

Rulegraph

Filegraph