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update module: PERBASE #9795

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@camlloyd camlloyd commented Jan 28, 2026

PR checklist

Closes #9794 by bumping perbase version and using topic channels

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@camlloyd camlloyd changed the title Perbase update module: PERBASE Jan 28, 2026
mashehu
mashehu approved these changes Jan 28, 2026
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modules/nf-core/perbase/tests/main.nf.test.snap
"id": "test",
"single_end": false
},
"test.tsv.gz:md5,a18ee6e481ab7cbad3c3a9f71465b904"
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@mashehu mashehu Jan 28, 2026

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Any idea why the results changed in the new version?

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@camlloyd camlloyd Jan 28, 2026

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One explanation is the COUNT_OF_MATE_RESOLUTIONS column that was introduced in version 1.1.0.

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@camlloyd camlloyd Jan 28, 2026

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Let's investigate how the output looks.

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@mashehu mashehu mashehu approved these changes

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update module: PERBASE

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