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Pull requests: nf-core/modules
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Add topics channel to tabix/bgzip and tabix/bgziptabix
#9790
opened Jan 27, 2026 by
ramprasadn
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17 tasks
Add Autocycler postassembly subworkflow
Ready for Review
#9786
opened Jan 27, 2026 by
dwells-eit
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5 of 10 tasks
Fix file extension for module PBMARKDUP
#9784
opened Jan 27, 2026 by
sainsachiko
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3 of 17 tasks
Add module stainwarpy/transformsegmask
#9778
opened Jan 26, 2026 by
tckumarasekara
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12 of 17 tasks
Add new module stainwarpy/register
#9777
opened Jan 26, 2026 by
tckumarasekara
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12 of 17 tasks
Add new module stainwarpy/extractchannel
#9776
opened Jan 26, 2026 by
tckumarasekara
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12 of 17 tasks
Fix variable redeclarations for strict syntax compliance (from branch)
#9756
opened Jan 22, 2026 by
ewels
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miniasm/ updated to use the new versions topics
#9755
opened Jan 22, 2026 by
MohineTAlam
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17 tasks done
migrate toulligqc to topic versions
#9750
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
migrate shovill module to topic versions
#9748
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
update to new versions capture for checkm2 databasedownload and checkm2 predict
#9744
opened Jan 22, 2026 by
eit-maxlcummins
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5 of 10 tasks
feat(yallhap/classify): Add new module for Y-chromosome haplogroup classification
#9704
opened Jan 20, 2026 by
trianglegrrl
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Draft
4 tasks done
Update all deeptools conda environment YAML files to version 3.5.6
#9685
opened Jan 16, 2026 by
bentyeh
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2 of 17 tasks
Fix variable redeclarations for strict syntax compliance
#9684
opened Jan 16, 2026 by
ewels
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new subworkflow - fastq shortreads preprocess qc
#9665
opened Jan 15, 2026 by
vagkaratzas
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8 of 17 tasks
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