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Add nextflow lint #9726

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Add nextflow lint #9726

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nextflow lint
maxulysse Jan 21, 2026
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maxulysse Jan 21, 2026
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6 changes: 6 additions & 0 deletions .github/workflows/lint.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -157,6 +157,9 @@ jobs:
- name: Lint module ${{ matrix.module }}
run: nf-core modules lint ${{ matrix.module }}

- name: Nextflow lint module ${{ matrix.module }}
run: NXF_SYNTAX_PARSER=v2 nextflow lint modules/nf-core/${{ matrix.module }}

nf-core-lint-subworkflows:
runs-on:
- runs-on=${{ github.run_id }}-nf-core-lint-subworkflows
Expand Down Expand Up @@ -189,6 +192,9 @@ jobs:
- name: Lint subworkflow ${{ matrix.subworkflow }}
run: nf-core subworkflows lint ${{ matrix.subworkflow }}

- name: Nextflow lint subworkflow ${{ matrix.subworkflow }}
run: NXF_SYNTAX_PARSER=v2 nextflow lint subworkflows/nf-core/${{ matrix.subworkflow }}

confirm-pass-lint:
runs-on:
- runs-on=${{ github.run_id }}-confirm-pass-lint
Expand Down