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Update all deeptools conda environment YAML files to version 3.5.6 #9685

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Update all deeptools conda environment YAML files to version 3.5.6 #9685

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e624988
Update all deeptools conda environment YAML files to version 3.5.6
bentyeh Jan 16, 2026
174ddc5
Re-add samtools to deeptools/bamcoverage environment.yml
bentyeh Jan 19, 2026
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3 changes: 1 addition & 2 deletions modules/nf-core/deeptools/alignmentsieve/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,5 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::samtools=1.20
- bioconda::deeptools=3.5.6
4 changes: 2 additions & 2 deletions modules/nf-core/deeptools/bamcoverage/environment.yml
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Expand Up @@ -4,5 +4,5 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::samtools=1.20
- bioconda::deeptools=3.5.6
- bioconda::samtools=1.23
4 changes: 3 additions & 1 deletion modules/nf-core/deeptools/bigwigcompare/environment.yml
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@@ -1,5 +1,7 @@
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
dependencies:
- "bioconda::deeptools=3.5.6"
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/computematrix/environment.yml
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Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/multibamsummary/environment.yml
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Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 2 additions & 0 deletions modules/nf-core/deeptools/multibigwigsummary/environment.yml
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@@ -1,3 +1,5 @@
---
# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
channels:
- conda-forge
- bioconda
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2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/plotcorrelation/environment.yml
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Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/plotfingerprint/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/plotheatmap/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/plotpca/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6
2 changes: 1 addition & 1 deletion modules/nf-core/deeptools/plotprofile/environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ channels:
- conda-forge
- bioconda
dependencies:
- bioconda::deeptools=3.5.5
- bioconda::deeptools=3.5.6