fix for bugs in barplotModuleEigenGene casued by sort and also a type…

[gitbenlewis]

fix for bugs in barplotModuleEigenGene casued by sort and also a type(colorBar) == dict line

[gitbenlewis]

adding this code to the Quick_Start.ipynb will reproduce the error

import pandas as pd

read the metadata file and append sex to the Genotype column

metadata = pd.read_csv('./5xFAD_paper/sampleInfo.csv')
metadata['Genotype_sex'] = metadata['Genotype'] + metadata['Sex']
display(metadata.head())

save the metadata file

metadata.to_csv('./5xFAD_paper/sampleInfo2.csv', index=False)

#pyWGCNA_5xFAD.updateSampleInfo(path='5xFAD_paper/sampleInfo.csv', sep=',')
pyWGCNA_5xFAD.updateSampleInfo(path='5xFAD_paper/sampleInfo2.csv', sep=',')

add color for metadata

pyWGCNA_5xFAD.setMetadataColor('Sex', {'Female': 'green',
'Male': 'yellow'})
pyWGCNA_5xFAD.setMetadataColor('Genotype', {'5xFADWT': 'darkviolet',
'5xFADHEMI': 'deeppink'})
pyWGCNA_5xFAD.setMetadataColor('Age', {'4_mon': 'thistle',
'8mon': 'plum',
'12mon': 'violet',
'18mon': 'purple'})
pyWGCNA_5xFAD.setMetadataColor('Tissue', {'Hippocampus': 'red',
'Cortex': 'blue'})

pyWGCNA_5xFAD.setMetadataColor('Genotype_sex', {'5xFADWTFemale': 'darkviolet',
'5xFADHEMIFemale': 'deeppink',
'5xFADWTMale': 'forestgreen',
'5xFADHEMIMale': 'lime'})

[iron-lion]

Hi,
I checked that sort patch can be issue with multiple metatables.

Here is my suggestion.
gitbenlewis#3

Best
YP