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thesaurus prelim #2

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thesaurus prelim #2

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9927212
adding some old dictinary query code
JohnLevander Jun 7, 2023
3050138
Merge remote-tracking branch 'refs/remotes/origin/master'
JohnLevander Jun 7, 2023
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252 changes: 125 additions & 127 deletions pom.xml
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Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

<modelVersion>4.0.0</modelVersion>
<groupId>org.healthnlp</groupId>
Expand All @@ -23,164 +24,161 @@
<version>${deepphe.version}</version>
</dependency>

<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-utils</artifactId>
<version>${ctakes.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queries</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queryparser</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-common</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-utils</artifactId>
<version>${ctakes.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-core</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queries</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-queryparser</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.lucene</groupId>
<artifactId>lucene-analyzers-common</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-core</artifactId>
<version>${ctakes.version}</version>
<exclusions>
<exclusion>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-core-res</artifactId>
</exclusion>
<exclusion>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
</exclusion>
<exclusion>
<groupId>jdom</groupId>
<artifactId>jdom</artifactId>
</exclusion>
<exclusion>
<groupId>jdom</groupId>
<artifactId>jdom2</artifactId>
</exclusion>
<exclusion>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-util</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-tools</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-maxent</artifactId>
</exclusion>
<exclusion>
<groupId>edu.mit.findstruct</groupId>
<artifactId>findstructapi</artifactId>
</exclusion>
<exclusion>
<groupId>com.googlecode.armbrust-file-utils</groupId>
<artifactId>sqlwrapper</artifactId>
</exclusion>
<exclusion>
<groupId>net.sourceforge.openai</groupId>
<artifactId>openaifsm</artifactId>
</exclusion>
<exclusion>
<groupId>com.lexicalscope.jewelcli</groupId>
<artifactId>jewelcli</artifactId>
</exclusion>
<exclusion>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-ml</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<exclusions>
<exclusion>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-core-res</artifactId>
</exclusion>
<exclusion>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
</exclusion>
<exclusion>
<groupId>jdom</groupId>
<artifactId>jdom</artifactId>
</exclusion>
<exclusion>
<groupId>jdom</groupId>
<artifactId>jdom2</artifactId>
</exclusion>
<exclusion>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-util</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-tools</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-maxent</artifactId>
</exclusion>
<exclusion>
<groupId>edu.mit.findstruct</groupId>
<artifactId>findstructapi</artifactId>
</exclusion>
<exclusion>
<groupId>com.googlecode.armbrust-file-utils</groupId>
<artifactId>sqlwrapper</artifactId>
</exclusion>
<exclusion>
<groupId>net.sourceforge.openai</groupId>
<artifactId>openaifsm</artifactId>
</exclusion>
<exclusion>
<groupId>com.lexicalscope.jewelcli</groupId>
<artifactId>jewelcli</artifactId>
</exclusion>
<exclusion>
<groupId>org.cleartk</groupId>
<artifactId>cleartk-ml</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>org.apache.uima</groupId>
<artifactId>uimaj-core</artifactId>
<version>2.9.0</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>org.apache.uima</groupId>
<artifactId>uimaj-document-annotation</artifactId>
<version>2.9.0</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>org.apache.uima</groupId>
<artifactId>uimafit-core</artifactId>
<version>2.2.0</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>org.apache.opennlp</groupId>
<artifactId>opennlp-tools</artifactId>
<version>1.7.2</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.2</version>
</dependency>
<dependency>
</dependency>
<dependency>
<groupId>com.lexicalscope.jewelcli</groupId>
<artifactId>jewelcli</artifactId>
<version>0.8.3</version>
</dependency>
</dependencies>
</dependency>
<dependency>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-fast</artifactId>
<version>${ctakes.version}</version>
<exclusions>
<!-- We do not want the standard ctakes dictionary -->
<exclusion>
<groupId>org.apache.ctakes</groupId>
<artifactId>ctakes-dictionary-lookup-fast-res</artifactId>
</exclusion>
</exclusions>
</dependency>

<repositories>
<repository>
<id>apache.snapshots</id>
<name>Apache Development Snapshot Repository</name>
<url>https://repository.apache.org/content/groups/snapshots/</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<!-- <repository>-->
<!-- <id>github</id>-->
<!-- <name>Github Packages</name>-->
<!-- <url>https://maven.pkg.github.com/DeepPhe/dphe-neo4j</url>-->
<!-- </repository>-->
</repositories>
</dependencies>

<build>
<finalName>deepphe-core</finalName>
<!-- It's good practice to explicitly declare versions for all plugins -->
<plugins>

<plugin>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
<version>2.9.0</version>
<executions>
<execution>
<goals><goal>generate</goal></goals>
<configuration>
<typeSystemIncludes>
<typeSystemInclude>src/main/resources/org/apache/ctakes/**/types/TypeSystem.xml</typeSystemInclude>
</typeSystemIncludes>
<limitToProject>true</limitToProject>
</configuration>
</execution>
</executions>
<groupId>org.apache.uima</groupId>
<artifactId>jcasgen-maven-plugin</artifactId>
<version>2.9.0</version>
<executions>
<execution>
<goals>
<goal>generate</goal>
</goals>
<configuration>
<typeSystemIncludes>
<typeSystemInclude>src/main/resources/org/apache/ctakes/**/types/TypeSystem.xml
</typeSystemInclude>
</typeSystemIncludes>
<limitToProject>true</limitToProject>
</configuration>
</execution>
</executions>
</plugin>

<plugin>
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