Integrate new lib code and nox

.github/workflows/tests.yml

@@ -4,13 +4,9 @@ on:
   push:
     branches:
       - main
-    paths-ignore:
-      - "*.md"
   pull_request:
     branches:
       - main
-    paths-ignore:
-      - "*.md"
 
 jobs:
   test:
@@ -21,25 +17,27 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
         python-version: 
-          - "3.11"
           - "3.12"
+          - "3.13"
 
     steps:
       - name: Checkout
         uses: actions/checkout@v4
 
       - name: Install uv
-        uses: astral-sh/setup-uv@v4
+        uses: astral-sh/setup-uv@v6
         with:
-          version: "0.5.5"
+          version: "latest"
 
       - name: Set up Python ${{ matrix.python-version }}
-        run: uv python install ${{ matrix.python-version }}
-
-      - name: Install project
-        run: uv sync --all-extras --dev
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
 
-      - name: Run tests with tox
-        run: |
-          uv run -- tox --version
-          uv run -- tox -e py
+      - name: Install dev dependencies
+        # TODO: maybe have to add explicit uv lock?
+        # run: uv sync --locked --only-dev --python="${{ matrix.python-version }}"
+        run: uv sync --only-dev --python="${{ matrix.python-version }}"
+
+      - name: Run tests with nox on ${{ matrix.os }}
+        run: uv run --locked --python="${{ matrix.python-version }}" -- nox -s "tests-${{ matrix.python-version }}"

.gitignore

@@ -1,7 +1,5 @@
 .venv/
-/data/
 __pycache__/
-.pdm-python
 dist/
 sdist/
-test.py
+# /data/

.python-version

@@ -1 +1 @@
-3.11
+3.13.3

README.md

@@ -2,17 +2,17 @@
 
 ![Tests](https://github.com/winter-again/csv-helper/workflows/Tests/badge.svg)
 
-A CLI for working with CSV data. Currently, primary focus is on workflows for imputing masked counts data.
-
-Note: `tests/data` has testing data
+A simple library and CLI for working with CSV data.
 
 ## Installation
 
-```bash
+```sh
+uv add "csv-helper @ git+ssh://git@github.com/winter-again/csv-helper"
+# using pip
 pip install git+https://git@github.com/winter-again/csv-helper
 # or via SSH
 pip install git+ssh://git@github.com/winter-again/csv-helper
 
-# designate specific version
+# designate specific version tag or branch
 pip install git+ssh://git@github.com/winter-again/csv-helper.git@v0.1.0
 ```

noxfile.py

@@ -0,0 +1,16 @@
+import nox
+
+nox.options.default_venv_backend = "uv"
+
+
+@nox.session(python=["3.12", "3.13"])
+def tests(session: nox.Session) -> None:
+    """Run tests with pytest."""
+    session.run_install(
+        "uv",
+        "sync",
+        "--locked",
+        f"--python={session.virtualenv.location}",
+        env={"UV_PROJECT_ENVIRONMENT": session.virtualenv.location},
+    )
+    session.run("pytest", "-vv", "tests")

pyproject.toml

@@ -1,38 +1,26 @@
 [project]
 name = "csv-helper"
-version = "0.2.2"
-description = "A simple CLI for imputing masked counts in CSV data"
+version = "0.3.0"
+description = "A simple library and CLI for working with CSV data"
 readme = "README.md"
-authors = [
-    {name = "Andrew Tiu", email = "andrew.tiu88@gmail.com"},
-]
-license = {text = "MIT"}
-requires-python = ">=3.11"
+authors = [{ name = "Andrew Tiu", email = "andrew.tiu88@gmail.com" }]
+license = "MIT"
+requires-python = ">=3.12"
 dependencies = [
-    "typer>=0.12.3",
-    "polars>=1.4.1",
-    "numpy>=2.0.1",
+    "numpy>=2.2.6",
+    "polars>=1.30.0",
+    "typer>=0.15.4",
 ]
 
 [project.scripts]
-csv-helper = "csv_helper.main:app"
+csv-helper = "csv_helper.cli:app"
 
 [build-system]
 requires = ["pdm-backend"]
 build-backend = "pdm.backend"
 
 [dependency-groups]
 dev = [
-    "pytest>=8.3.2",
-    "tox>=4.23.2",
-    "tox-uv>=1.16.0",
-]
-
-[tool.pyright]
-include = ["src"]
-exclude = [
-    "**/__pycache__"
+    "nox>=2025.5.1",
+    "pytest>=8.3.5",
 ]
-
-[tool.pytest.ini_options]
-pythonpath = ["src"]