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bindingModel

Shiny web app that uses an ODE solver (deSolve) to run a bimolecular binding simulation.

The simulation and key view elements are factored out in model.R, making it relatively easy to alter the core features of the application.

A quick tutorial for rna.wlu.edu users that walks through how you can fork and hack this simulation can be found on the wiki.

Version

  • 0.5 Greatly improved parameter/state interpolation (previously called the Summary tab, now the Simmulation tab)
  • 0.4 Fixed divide by zero bugs
  • 0.3 Improved model summary tab
  • 0.2 Added a model summary feature
  • 0.1 Intial release

License

Copyright © 2016 Gregg Whitworth and licensed under GPLv2.

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Shiny application providing fun visualizations for a bimolecular binding interaction

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