Skip to content

Nanostring microRNA and ddPCR microarray analysis code for : Characterization of Usher Syndrome Cell line Genotypes and Elucidation of Novel MicroRNA Biomarkers using MicroRNA Microarray and Droplet Digital PCR

Notifications You must be signed in to change notification settings

westom21/Usher_miRNA

Repository files navigation

Usher B lymphocyte cell line miRNA microarray analysis

An analysis of NanoString miRNA microarray and ddPCR analysis.

All data needed for this analysis is provided in the repository: Raw RCC files from the nanostring assay: rcc_files/ ddPCR copy number data: "ddpcr_up.txt" and "ddpcr_down.txt" sample metadata: "samplesheet.csv" log2FC tables for ddpcr and microarray DESeq2: "ddPCR_log2FC_tab.txt" and "fc_tab.txt" ush.mirna.Rmd and ush.mirna.html markdowns provide R code for analysis.

About

Nanostring microRNA and ddPCR microarray analysis code for : Characterization of Usher Syndrome Cell line Genotypes and Elucidation of Novel MicroRNA Biomarkers using MicroRNA Microarray and Droplet Digital PCR

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages