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@halilozbasak halilozbasak commented Oct 6, 2025

What type of PR is this? (check all applicable)

  • Bug Fix
  • Feature
  • Optimization
  • Documentation Update

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halilozbasak and others added 3 commits October 6, 2025 14:00
This commit adds a new file `extra/annotation.md` that provides documentation for the annotation-related scripts located in the `extra/` directory. The documentation covers the usage of `annotation_ui.py`, `analyze_spot_clusters.py`, and `run_starfish_spotiflow.py`, including command-line arguments and interactive controls where applicable.
@AlbertDominguez
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Hi @halilozbasak, thanks for the PR! It's good to gave some extra docs on the annotation/extra scripts :)

I see you've also included some scripts for analysing beads BeadDetection, I think they should probably be excluded for the main repo. Could you remove those? Then I'll merge straight away!

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2 participants