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krona

Here are 7 public repositories matching this topic...

nf-core / hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

taxonomies workflow pipeline nextflow ngs tidyverse multiqc samtools bwa-mem horizontal-gene-transfer genomics-visualization fastqc nf-core krona kraken2 bwa-mem2 ggbio

Updated Nov 20, 2025
Nextflow

owebeeone / jowna

Jowna is a modern, offline-ready visualization tool for hierarchical data (metagenomics, file systems). It generates a single, portable HTML file containing both the viewer and your dataset. Designed as a drop-in alternative to Krona (no Perl required). Built using an AI-First architecture with @owebeeone/grip-react.

react visualization bioinformatics offline-first metagenomics hierarchical-data sunburst krona single-file-app grip-react

Updated Feb 12, 2026
TypeScript

scott-rdl / OTU-table-to-KRONA-pie

This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.

bioinformatics pie otu otu-table bioinformatics-tool krona krona-pie page-krona-html

Updated May 28, 2018
Shell

OpenOmics / weave

An awesome BCL demultiplexing and FastQ quality-control pipeline

kaiju bcl2fastq fastp krona kraken2 bclconvert fastq-quality-control contamination-screening disambiguate-genomes

Updated Apr 22, 2025
Python

casperp / Dwarf-Fortress-Krona

Make beautiful Krona plots from dwarf fotress world sites and pops file.

plot dwarf-fortress krona-charts krona krona-pie krona-plots

Updated Nov 18, 2018
Python

gaenssle / Krona_DataExtractor

Extract raw data from krona.html files and count the reads at each taxonomy level

python taxonomy metagenomics krona

Updated Jul 3, 2023
HTML

georgesmbock / metagenomic_pipeline

Reproducible and memory-efficient viral metagenomics pipeline with Docker, Kraken2, and manual ecological analysis in Jupyter notebooks.

docker-container metagenomics bioinformatics-pipeline reproducibility virome krona kraken2 ecological-indices jupyter-notebook-python

Updated Jul 10, 2025
Jupyter Notebook

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