#
genemark
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A metagenomics pipeline project that runs sequencing QC, taxonomic profiling, assembly, gene prediction, and functional annotation using common CLI tools (FastQC, MetaPhlAn, MEGAHIT, GeneMarkS, BLAST) plus light Python/shell automation.
assembly metagenomics bioinformatics-pipeline blast fastq genemark fastqc metaphlan megahit taxonomic-profiling
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Updated
Dec 30, 2025
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