Open Source Cross-Platform C++ library to read CZI image files
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Sep 30, 2022 - C++
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czi
Here are 20 public repositories matching this topic...
Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics
python metadata ai deep-learning scripting image-processing segmentation zen image-analysis czi czmodel pylibczirw zenapi zen-api
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Oct 27, 2025 - Jupyter Notebook
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
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Dec 16, 2025 - Python
napari plugin to open CZI image files and their metadata
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Dec 16, 2025 - Python
Python module utilizing libCZI for reading Zeiss CZI files.
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Mar 11, 2020 - Python
Application to "Collaborative Computational Tools for the Human Cell Atlas" https://chanzuckerberg.com/initiatives/rfa
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Aug 27, 2017
CITE-seq profiling of human PBMCs at baseline and activation conditions
visualization shiny baseline single-cell single-cell-rna-seq czi lps cite-seq immune-system chan-zuckerberg-initiative human-cell-atlas pbmc cell-hashing anti-cd3 anti-cd28
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Sep 12, 2023 - R
Small python package to simplify reading CZI Image Metadata (*.czi)
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Mar 25, 2023 - Jupyter Notebook
Speedy Carl Zeiss Image (.czi) Divination
c cli extraction image-processing medical-imaging work-in-progress zeiss czi extraction-api image-ination
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May 3, 2019 - C
read CZI-documents from Wolfram Language
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Mar 26, 2023 - CMake
A repository that collects our findings from our efforts under the CZI/HCA project.
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Aug 10, 2018 - CSS
converts your czi images to pngs
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Dec 19, 2024 - Python
An application that is responsive to CZI's RFA.
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Nov 13, 2018 - CSS
A python program to convert CZI image to PNG image.
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Jan 24, 2025 - Python
tool for adding an image-pyramid to a CZI document
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Dec 16, 2025 - C++
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Nov 21, 2025 - Python
A specialized batch-processing pipeline for Zeiss CZI files. Optimized for ApoTome & Brain sections. Fixes hyperstack dimensions, recovers LUTs, and removes shading via rolling-ball pre-processing.
metadata bioinformatics imagej fiji mit-license batch-script image-stitching microscopy jython life-sciences whole-slide-imaging czi zeisshack zeiss-czi-files microscopy-data bioimage vibe-coding
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Dec 30, 2025 - Roff
Downloading and processing pipelines used for single cell gene expression assays of human tumor biopsies
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Jan 25, 2018 - Shell
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