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cell-damage

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ChrisBotos / ATLAS-Cellpose

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Created by Christos Botos, ATLAS-Cellpose (Adaptive Tiled Local Analysis Segmentation for Cellpose) is a tool developed at the Human Genetics Department of LUMC. It improves cell and nuclei segmentation by adaptively tiling images, running Cellpose with tile-specific parameters, and merging results via a four-step algorithm supervised by A.Mahfouz.

machine-learning spatial cnn python3 transcriptomics cell-segmentation nephrology vision-transformer cell-damage cell-repair
  • Updated Dec 11, 2025
  • Python

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