This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

Python Programming for Biologists

A Gentle Introduction to R, RStudio, and visualization

Training materials for Prism 8

RML Introduction to Structural Biology

Example workflow using LOCUS to identify viral sequences in bulk metagenomic data

An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce modern data science practice using the R language.

RNAseq workshop courses and materials

Introductory notes on using Geneious (Biomatters) at NIAID

A general introduction for biologists on scRNAseq, with a focus on the difference from bulk RNA-seq

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce R programming.

Training Materials for Survey Data Analysis in R (Exposure from NHANES)

Training materials for Statistical Testing

Introductory practical training on preprocessing and QC of RNA Seq data

Training materials for UNIX course

Teaching Materials for 2024-2025 Spatial Transcriptomics workshops, prepared by Margaret Ho (NIAID BCBB Science Support)

Microbiome Data Analysis and Nephele Demo

Training: Alphafold Protein Structure Prediction with Chimera X. Tutorial on using Chimera X for AlphaFold Protein Structure. It starts by showing how search and navigate the database PDB for relevant structural data.