Parallel bgzip cram#13

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daheise wants to merge 9 commits intostatgen:masterfrom

daheise:parallel-bgzip-cram

Commits on Sep 27, 2018

Add dependencies to htslib and libbam. Use my fork of libStatGen for development.
daheise
committed

Commits on Oct 1, 2018

Use CPUs argument to set number of threads for parallel IO.
daheise
committed

Commits on Oct 4, 2018

Fix a threadbomb and multithread final write.
daheise
committed

Commits on Oct 10, 2018

Commits on Oct 11, 2018

Change cget requirement to github code.
daheise
committed

Commits on Nov 30, 2020

Merge branch 'master' of github.com:statgen/Minimac4 into parallel-bgzip-cram
daheise
committed

Commits on Sep 21, 2021

Merge branch 'master' of github.com:statgen/Minimac4 into parallel-bgzip-cram
daheise
committed