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Add epacts download to the help menu #42

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8 changes: 8 additions & 0 deletions scripts/epacts
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Expand Up @@ -89,6 +89,7 @@ epacts [command] [options]
meta Perform meta-analysis across multiple epacts results
make-group Create the group information for gene-based testing
make-kin Create a kinship matrix
download Download the reference sequence file
version prints version

Visit http://genome.sph.umich.edu/wiki/EPACTS for more detailed documentation
Expand Down Expand Up @@ -127,6 +128,13 @@ Perform meta-analysis across multiple epacts results. Type 'epacts meta -help' f

=back

=item B<download>

Download the reference sequence file (currently supports only GRCh37) to run EPACTS with annotation support.

=back


=head1 DESCRIPTION

B<epacts> is an efficient and flexible software pipelien for sequence-based
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