Fix pip install from source for Mac

README.md

@@ -87,6 +87,8 @@ $ conda install alartum::ncvis
 
 **Important**: be sure to have *OpenMP* available.
 
+Install for Mac: `$ brew install libomp`
+
 First of all, download the *pcg-cpp* and *hnswlib* libraries:
 ```bash
 $ make libs
@@ -103,7 +105,9 @@ If *conda* environment is used, it replaces library search paths. To prevent com
 
 * Pip
     ```bash
-    $ pip install numpy cython pybind11
+    $ uv venv --python 3.11
+    $ source .venv/bin/activate
+    $ uv pip install -r requirements.txt
     $ make wrapper
     ```
 

requirements.txt

@@ -0,0 +1,5 @@
+cython==3.0.2
+numpy==1.26.1
+pybind11==2.13.6
+scipy==1.15.2
+setuptools==61.0.0

setup.py

@@ -77,14 +77,9 @@ def finalize_options(self):
             deps = runtime_deps
 
 
-try:
-    from Cython.Build import cythonize
-    import numpy
-    import pybind11  # noqa: F401
-except ImportError:
-    print("numpy/cython/pybind11 are not installed:")
-    print(">> pip install numpy cython pybind11")
-    exit(1)
+from Cython.Build import cythonize
+import numpy
+import pybind11  # noqa: F401
 
 with open("recipe/meta.yaml", "r") as f:
     config = f.read()
@@ -118,21 +113,27 @@ def finalize_options(self):
         "-std=c++14",
         "-fpic",
         "-ffast-math",
-        "-fopenmp=libiomp5",
+        "-fopenmp",
+        "-Wl,-rpath,/opt/homebrew/opt/libomp/lib"
     ]
-    libraries = ["m", "iomp5"]
+    extra_link_args = ["-L/opt/homebrew/opt/libomp/lib", "-lomp"]
+    libraries = ["m"]
+    include_dirs = [numpy.get_include(), "/opt/homebrew/opt/libomp/include"]
 elif sys.platform.startswith("linux"):
     extra_compile_args = ["-O3", "-std=c++14", "-ffast-math", "-fopenmp"]
+    extra_link_args = []
     libraries = ["m", "gomp"]
 elif sys.platform.startswith("win32"):
     extra_compile_args = ["/O2", "/fp:fast", "/openmp"]
+    extra_link_args = []
     libraries = ["/openmp"]
 
 extensions = [
     Extension(
         "ncvis",
         ["wrapper/*.pyx", *src],
         extra_compile_args=extra_compile_args,
+        extra_link_args=extra_link_args,
         libraries=libraries,
         include_dirs=[numpy.get_include()],
         language="c++",