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ChemCell Simulator
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sjplimp/chemcell
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This is the ChemCell (10 Sept 2008) software package. Copyright (2004) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. ---------------------------------------------------------------------- ChemCell is a particle-based reaction/diffusion simulator designed for modeling protein networks in biological cells with spatial information. Spatial simulations can be run efficiently on parallel computers. Non-spatial simulations can also be run using an ODE solver or the Gillespie Stochastic Simulation Algorithm (SSA). ChemCell was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL). The authors of the code are Steve Plimpton and Alex Slepoy, who can be emailed at sjplimp@sandia.gov and alexander.slepoy@nnsa.doe.gov. The ChemCell WWW Site at www.cs.sandia.gov/~sjplimp/chemcell.html has more information about the code and its uses. The ChemCell (10 Sept 2008) distribution includes the following files and directories: README this file LICENSE the GNU General Public License (GPL) doc documentation examples test problems src source files Point your browser at any of these files to get started: doc/Manual.html the ChemCell manual doc/Section_intro.html hi-level introduction to ChemCell doc/Section_start.html how to build and use ChemCell
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