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Convert dbSNP into TSV-files: ParseJSONToFile.java misses HGVS names

Status: Open.

#45 In rockt/SETH;

· sg-wbi opened on May 31, 2023

Add flag to identify synonymous variations

Status: Open.

#35 In rockt/SETH;

· Erechtheus opened on Oct 2, 2021

Detect ss-sequences

Status: Open.

#34 In rockt/SETH;

· Erechtheus opened on Oct 2, 2021

Use Mutalyzer or hgvs for variant normalization

enhancement

Status: Open.

#32 In rockt/SETH;

· Erechtheus opened on Jul 15, 2021

Parse dbSNP from JSON and no longer from XML

Status: Open.

#31 In rockt/SETH;

· Erechtheus opened on Jun 17, 2021

Additional evaluation corpus (Amia18)

enhancement

Status: Open.

#23 In rockt/SETH;

· Erechtheus opened on Mar 9, 2019

Improve entity normalization using more HGVS mentions

enhancement

Status: Open.

#22 In rockt/SETH;

· Erechtheus opened on Sep 8, 2017

Improve named entity normalization using patterns

enhancement

Status: Open.

#21 In rockt/SETH;

· Erechtheus opened on Sep 8, 2017

Additional evaluation corpus (TMVar 2.0)

enhancement

Status: Open.

#20 In rockt/SETH;

· Erechtheus opened on Sep 8, 2017

Write BRAT compatible annotations

enhancement

Status: Open.

#19 In rockt/SETH;

· Erechtheus opened on Aug 21, 2017

Additional evaluation corpora (Nala)

enhancement

Status: Open.

#18 In rockt/SETH;

· Erechtheus opened on Aug 17, 2017

Map variants down to chromosomal location + allele

enhancement

Status: Open.

#15 In rockt/SETH;

· jhkbg opened on Nov 30, 2016