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1. GOPHER GOPHER Public

   Forked from shtoneyan/gopher

   Toolset for training quantitative sequence to function models.

   Jupyter Notebook 2

2. evoaug evoaug Public

   Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics

   Python 25 7

3. creme-nn creme-nn Public

   https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2

   Python 32 6

4. squid-nn squid-nn Public

   Forked from evanseitz/squid-nn

   surrogate quantitative interpretability for deepnets

   Python 1

5. HIPPO HIPPO Public

   Forked from kaczmarj/HIPPO

   HIPPO 🦛 is an explainable AI toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing on tissue and searching for high-effect and low-effect tissue regions.

   Python

6. styler styler Public

   AI-powered document editing with personalized style preferences

   TypeScript