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victorlin
reviewed
Jul 12, 2024
victorlin
previously approved these changes
Jul 16, 2024
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Looks good pending cleanup of commits or squash+merge on GitHub
tsibley
previously requested changes
Jul 17, 2024
corneliusroemer
commented
Jul 17, 2024
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Author
|
Will take a few minutes for gzip arm64 to become available, rerun later then it should work Update: it works |
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I will squash :) |
corneliusroemer
requested review from
genehack,
huddlej,
jameshadfield and
joverlee521
corneliusroemer
changed the title
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I'm picking this up since I'd like to run MAFFT natively on my M1 Mac and this would be a proper way to allow that in managed runtimes. |
The osx-arm64 build of unzip provided by conda cannot extract the info
file from the conda package. The error is apparent when running with
unzip directly:
skipping: info-nextstrain-base-20250203T230808Z-h60d57d3_0.tar.zst need PK compat. v4.5 (can do v2.1)
p7zip does not have this issue.
victorlin
removed request for
genehack,
huddlej,
jameshadfield,
joverlee521 and
tsibley
Member
|
I've gathered and dropped what seems to be unnecessary changes as 3fc1f03. Changes are minimal now and this is ready for re-review. |
victorlin
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tsibley
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Feb 5, 2025
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Looks good to me. I pushed two commits as an alternative to the temporary commit (see comment); take it or leave it!
It seems unnecessary to tank the build just because we fail to generate a package diff.
Avoids letting the issue surface as more distant and perplexing errors in jq and wget.
tsibley
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May 15, 2025
When supported, new setups will get osx-arm64 instead of osx-64 and existing setups will be upgraded from osx-64 → osx-arm64. If the version of nextstrain-base that's being installed/upgraded (or more likely, downgraded to) to does not have an osx-arm64 build, then an osx-64 build will be used instead (provided Rosetta 2 is enabled). Co-authored-by: Victor Lin <13424970+victorlin@users.noreply.github.com> Related-to: <#379> Related-to: <nextstrain/conda-base#80>
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tsibley
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May 15, 2025
When supported, new setups will get osx-arm64 instead of osx-64 and existing setups will be upgraded from osx-64 → osx-arm64. If the version of nextstrain-base that's being installed/upgraded (or more likely, downgraded to) to does not have an osx-arm64 build, then an osx-64 build will be used instead (provided Rosetta 2 is enabled). Co-authored-by: Victor Lin <13424970+victorlin@users.noreply.github.com> Related-to: <#379> Related-to: <nextstrain/conda-base#80>
tsibley
added a commit
to nextstrain/cli
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May 19, 2025
When supported, new setups will get osx-arm64 instead of osx-64 and existing setups will be upgraded from osx-64 → osx-arm64. If the version of nextstrain-base that's being installed/upgraded (or more likely, downgraded to) to does not have an osx-arm64 build, then an osx-64 build will be used instead (provided Rosetta 2 is enabled). Co-authored-by: Victor Lin <13424970+victorlin@users.noreply.github.com> Related-to: <#379> Related-to: <nextstrain/conda-base#80>
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Description of proposed changes
Build conda-base for osx-arm64 as well.
Related issue(s)
Resolves #77
Checklist