scAtlasTb-utils

Package for scAtlasTb utils functions

Getting started

Please refer to the documentation, in particular, the API documentation.

Installation

You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing uv.

There are several alternative options to install scAtlasTb-utils:

1. Install the latest development version:

pip install git+https://github.com/mumichae/scAtlasTb-utils.git@main

If you plan to use utilities that integrate with Snakemake, install the optional extra:

pip install 'git+https://github.com/mumichae/scAtlasTb-utils.git@main#egg=scatlastb-utils[snakemake]'

or, after cloning locally:

pip install .[snakemake]

Release notes

See the changelog.

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

Citation

t.b.a