Add "dash" options to the bash scripts, and some additional refactoring#15

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mpaiao wants to merge 15 commits intomonanadmin:developfrom

mpaiao:use_dash-develop

Commits on Jan 26, 2026

Multiple edits to the CD-CT scripts, mostly minor.
mpaiao
committed

Commits on Jan 27, 2026

Some additional features:
mpaiao
committed
Some options do not seem to be working. Add more context to the error message.
mpaiao
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I edited every setenv.bash call so all of them load the MONAN_ONETWO flag, and edited
mpaiao
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Remove if statement from setenv.bash, and try to edit MONAN's Makefile instead.
mpaiao
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Bug fix, variable DIRDADOS is no longer defined in setenv.bash, so INPUT_PATH must update
mpaiao
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Somehow step 2 is not running due to paths being incorrect on jaci.
mpaiao
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Add config_lsm_scheme to the default namelist (so it is easier to change when switching
mpaiao
committed

Commits on Jan 28, 2026

Add a bit more information on MONAN when checking for compatibility with scripts_CD-CT.
mpaiao
committed

Commits on Feb 2, 2026