Add support for running Data Prep using Airflow #670
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… can be reused for airflow
…to dicts on SubmitCube.run
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…ed without a base url
…point to that endpoint, so users can login with a single click
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The last few pushes update the Airflow dependency to 3.1.5, the most recent version at this time |
…ADME.md with this new implementation.
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This PR adds support to run the MedPerf Data Preparation step in Airflow, in addition to the old format of having a single Data Preparation container. Airflow workflows may be defined by using simplified YAML files specifying the data preparation steps. Steps must be containers, but different steps may use different container images. Three examples of data preparation workflows are added to the
examplesdirectory:chestxray_tutorial/data_preparation_workflow(modified version of the Chest X Ray example from the MedPerf documentation),RANO/data_preparation_workflow(modified version of the RANO data preparation MLCube) andexamples/HEMnet/data_preparator(modified version of the HEMnet data preparation code to run in Airflow and MedPerf).This PR also updates various MedPerf dependencies for compatibility with the newly added Airflow 3.0.1 dependency. Notably, Pydantic has been updated to v2.11.0, with necessary code changes already implemented.