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2 changes: 1 addition & 1 deletion .Rbuildignore
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
^veupathUtils\.Rproj$
^mbioUtils\.Rproj$
^\.Rproj\.user$
^\.github$
^codecov\.yml$
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208 changes: 0 additions & 208 deletions .dev/megastudy-helpers.R

This file was deleted.

40 changes: 17 additions & 23 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,39 +1,39 @@
Package: veupathUtils
Title: General Helper Functions for MicrobiomeDB Projects
Version: 2.6.7
Package: mbioUtils
Title: Utility Functions for MicrobiomeDB R Packages
Version: 0.1.0
Authors@R:
c(person(given = "Danielle",
family = "Callan",
role = c("aut"),
role = c("aut", "cre"),
email = "dcallan@upenn.edu"),
person(given = "Ann",
family = "Blevins",
role = c("aut", "cre"),
email = "annsize@upenn.edu"))
role = c("aut"),
email = "annsize@upenn.edu",
comment = "Original veupathUtils author"))
biocViews:
Imports:
boot,
data.table,
digest,
Hmisc,
microbenchmark,
methods,
purrr,
S4Vectors,
SpiecEasi (>= 1.1.1),
stringi,
purrr
SpiecEasi (>= 1.0.7),
stringi
Depends:
R (>= 2.10),
jsonlite
Remotes:
zdk123/SpiecEasi
URL: https://github.com/microbiomeDB/veupathUtils
BugReports: https://github.com/microbiomeDB/veupathUtils/issues
Description: veupathUtils contains various R helper functions intended to be useful across a variety of projects, including the plot.data and microbiomeComputations packages.
zdk123/SpiecEasi@v1.0.7
URL: https://github.com/microbiomeDB/mbioUtils
BugReports: https://github.com/microbiomeDB/mbioUtils/issues
Description: mbioUtils contains utility functions and data structures for microbiomeDB R packages, including microbiomeComputations, MicrobiomeDB, and microbiomeData. Forked from veupathUtils 2.6.7.
License: Apache License (>= 2)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
RoxygenNote: 7.3.3
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3
Expand All @@ -46,22 +46,16 @@ Collate:
'class-VariableMetadata.R'
'class-ComputeResult.R'
'class-CorrelationResult.R'
'class-Megastudy.R'
'class-Range.R'
'class-Statistic.R'
'data.R'
'mbioUtils-package.R'
'method-correlation.R'
'methods-Bin.R'
'methods-CollectionWithMetadata.R'
'methods-Collections.R'
'methods-VariableMetadata.R'
'methods-ComputeResult.R'
'methods-Megastudy.R'
'methods-SampleMetadata.R'
'methods-Statistic.R'
'utils-classes.R'
'utils-cut.R'
'utils-numeric.R'
'utils-string.R'
'utils.R'
'veupathUtils-package.R'
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