Update documentation and packages

[michplunkett]

Describe your changes

Updated the above packages and implemented the correct version of default into the Makefile.

Checklist before requesting a review

• The code runs successfully.

michaelp@Mac python-project-template % make env
uv venv
Using CPython 3.12.0 interpreter at: /Users/michaelp/.pyenv/versions/3.12.0/bin/python3.12
Creating virtual environment at: .venv
Activate with: source .venv/bin/activate
michaelp@Mac python-project-template % source .venv/bin/activate
(python-project-template) michaelp@Mac python-project-template % make
uv pip compile --generate-hashes pyproject.toml > requirements.txt
Resolved 19 packages in 17ms
pre-commit run --all-files
[INFO] Installing environment for https://github.com/nbQA-dev/nbQA.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
[INFO] Installing environment for https://github.com/nbQA-dev/nbQA.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
[INFO] Installing environment for https://github.com/nbQA-dev/nbQA.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
[INFO] Installing environment for https://github.com/pre-commit/pre-commit-hooks.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
[INFO] Installing environment for https://github.com/PyCQA/isort.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
[INFO] Installing environment for https://github.com/astral-sh/ruff-pre-commit.
[INFO] Once installed this environment will be reused.
[INFO] This may take a few minutes...
nbqa-ruff................................................................Passed
nbqa-black...............................................................Passed
nbqa-isort...............................................................Passed
trim trailing whitespace.................................................Passed
check docstring is first.................................................Passed
check that executables have shebangs.................(no files to check)Skipped
check json...........................................(no files to check)Skipped
check for case conflicts.................................................Passed
check toml...............................................................Passed
check for merge conflicts................................................Passed
check xml............................................(no files to check)Skipped
check yaml...............................................................Passed
fix end of files.........................................................Passed
check for broken symlinks............................(no files to check)Skipped
mixed line ending........................................................Passed
sort simple yaml files...............................(no files to check)Skipped
fix python encoding pragma (deprecated)..................................Passed
pretty format json...................................(no files to check)Skipped
check blanket noqa.......................................................Passed
check for not-real mock methods..........................................Passed
check for eval().........................................................Passed
use logger.warning(......................................................Passed
Run isort to sort imports................................................Passed
ruff.....................................................................Passed
ruff-format..............................................................Passed
(python-project-template) michaelp@Mac python-project-template % make test
pytest -vs tests/
============================================================================================= test session starts ==============================================================================================
platform darwin -- Python 3.11.11, pytest-7.3.1, pluggy-1.0.0 -- /opt/homebrew/opt/python@3.11/bin/python3.11
cachedir: .pytest_cache
rootdir: /Users/michaelp/Documents/GitHub/python-project-template
plugins: anyio-3.6.2
collected 1 item

tests/test_example.py::test_example PASSED

============================================================================================== 1 passed in 0.00s ===============================================================================================
(python-project-template) michaelp@Mac python-project-template % make test-and-fail
pytest -vsx tests/
============================================================================================= test session starts ==============================================================================================
platform darwin -- Python 3.11.11, pytest-7.3.1, pluggy-1.0.0 -- /opt/homebrew/opt/python@3.11/bin/python3.11
cachedir: .pytest_cache
rootdir: /Users/michaelp/Documents/GitHub/python-project-template
plugins: anyio-3.6.2
collected 1 item

tests/test_example.py::test_example PASSED

============================================================================================== 1 passed in 0.00s ===============================================================================================
(python-project-template) michaelp@Mac python-project-template % make run
python -m project
oh, what up?
(python-project-template) michaelp@Mac python-project-template %