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Modularize VisCy

breakingBreaking changesBreaking changes

maintenanceMaintenance workMaintenance work

Status: Open.

Task

#353 In mehta-lab/VisCy;

· srivarra opened on Jan 14, 2026

Standalone transforms library

Status: Open.

#348 In mehta-lab/VisCy;

· ziw-liu opened on Dec 10, 2025

DynaCLR patch selection is too restrictive for smaller FOVs and large patch sizes

enhancementNew feature or requestNew feature or request

Status: Open.

#338 In mehta-lab/VisCy;

· edyoshikun opened on Nov 5, 2025

Add integration tests for our DynaCLR pipline

CIContinuous integrationContinuous integration

enhancementNew feature or requestNew feature or request

Status: Open.

#333 In mehta-lab/VisCy;

· edyoshikun opened on Nov 3, 2025

Logging the model configs using save_hyperparms

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#302 In mehta-lab/VisCy;

· edyoshikun opened on Sep 17, 2025

·  

v0.4.1

PC viewer issues

bugSomething isn't workingSomething isn't working

representationRepresentation learning (SSL)Representation learning (SSL)

Status: Open.

#297 In mehta-lab/VisCy;

· Soorya19Pradeep opened on Sep 11, 2025

Update the DL Course Notebook based on 2025 feedback

documentationImprovements or additions to documentationImprovements or additions to documentation

translationImage translation (VS)Image translation (VS)

Status: Open.

#293 In mehta-lab/VisCy;

· edyoshikun opened on Sep 10, 2025

update to iohub and zarr v3

enhancementNew feature or requestNew feature or request

maintenanceMaintenance workMaintenance work

Status: Open.

#292 In mehta-lab/VisCy;

· edyoshikun opened on Sep 10, 2025

·  

v0.4.1

Lightning 2.5.5 breaks checkpoint reuse

bugSomething isn't workingSomething isn't working

translationImage translation (VS)Image translation (VS)

Status: Open.

#291 In mehta-lab/VisCy;

· ziw-liu opened on Sep 10, 2025

Organize segmentations, tracking, annotations, and embeddings with DynaCell zarr stores

Status: Open.

#290 In mehta-lab/VisCy;

· mattersoflight opened on Sep 9, 2025

·  

v0.4.0

Setup RTD and Documentation Infrastructure

documentationImprovements or additions to documentationImprovements or additions to documentation

maintenanceMaintenance workMaintenance work

Status: Open.

Feature

#288 In mehta-lab/VisCy;

· srivarra opened on Sep 9, 2025

·  

v0.4.0

Issues with VSNeuromast Inference

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#287 In mehta-lab/VisCy;

· edyoshikun opened on Sep 5, 2025