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AssignGenes.py igblast --format airr: problem of translation

Status: Open.

#49 In matsengrp/sumrep;

· gael-millot opened on Sep 19, 2025

AssignGenes.py igblast --format airr does not introduce the IMGT-gaps spacers as with AssignGenes.py igblast --format blast

Status: Open.

#48 In matsengrp/sumrep;

· gael-millot opened on Sep 19, 2025

Install instructions need to be updated

Status: Open.

#46 In matsengrp/sumrep;

· scharch opened on Feb 1, 2023

Using sumrep docker spec with singularity

Status: Open.

#44 In matsengrp/sumrep;

· bcorrie opened on Oct 28, 2021

Dependencies missing in REDAME

Status: Open.

#42 In matsengrp/sumrep;

· shashidhar22 opened on Apr 2, 2021

Convert plotting functions to use plotUnivariateDistributions

enhancement

Status: Open.

#39 In matsengrp/sumrep;

· the-bos opened on Apr 28, 2019

Getting indel statistics from IGBlast

enhancement

Status: Open.

#38 In matsengrp/sumrep;

· the-bos opened on Apr 28, 2019

Clonal clustering for TCR repertoires

enhancement

Status: Open.

#37 In matsengrp/sumrep;

· the-bos opened on Apr 28, 2019

Allow for general file extensions for IgBlast output

bug

Status: Open.

#36 In matsengrp/sumrep;

· the-bos opened on Apr 28, 2019

Elaborate on IgBlast and ChangeO installation in docs

enhancement

Status: Open.

#35 In matsengrp/sumrep;

· the-bos opened on Apr 28, 2019

Allow custom filters in summaries of sequence columns

enhancement

Status: Open.

#32 In matsengrp/sumrep;

· the-bos opened on Mar 29, 2019

Standardize locus input

enhancement

Status: Open.

#30 In matsengrp/sumrep;

· the-bos opened on Mar 27, 2019