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DensityTree cloudogram with branches colored by clade

Status: Open.

#171 In liamrevell/phytools;

· nbat64 opened on Dec 24, 2025

make.simmap very slow

Status: Open.

#170 In liamrevell/phytools;

· OKyne1 opened on Dec 18, 2025

Midpoint_root versus midpoint.root: newer version roots incorrectly?

Status: Open.

#169 In liamrevell/phytools;

· NikoHensley opened on Oct 25, 2025

cophylo plot doesn't produce trees, only two vertical lines

Status: Open.

#168 In liamrevell/phytools;

· mprodriguezp opened on Oct 23, 2025

issues fitting a non-gaussian trait with fitmultiBM

Status: Open.

#167 In liamrevell/phytools;

· mluerig opened on Jul 7, 2025

Clarification on default priors used by threshBayes

Status: Open.

#166 In liamrevell/phytools;

· JAKennerley opened on Jul 3, 2025

adding ticks to the contMap plot legend, or a way to discretize by range

Status: Open.

#164 In liamrevell/phytools;

· aersoares81 opened on Jun 10, 2025

Update on Post-hoc tests following pGLS

Status: Open.

#163 In liamrevell/phytools;

· MaximePolicarpo opened on Feb 27, 2025

contMap crashes if ancestral states are named with node names

Status: Open.

#162 In liamrevell/phytools;

· bredelings opened on Dec 31, 2024

Convert printing to console into messages/warnings/errors

Status: Open.

#161 In liamrevell/phytools;

· NiklasHohmann opened on Dec 28, 2024

Plot a map area cross Longitude 180

Status: Open.

#159 In liamrevell/phytools;

· Ruiqi-CUB opened on Sep 18, 2024

Upside down Phylogeny when plotting with a map

Status: Open.

#158 In liamrevell/phytools;

· Ruiqi-CUB opened on Sep 18, 2024