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Automated software info update #9

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28 changes: 15 additions & 13 deletions software_info/README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,31 +5,33 @@ KrishnanLab GitHub organization.

| Name | Stars | Forks | Package name | Weekly downloads | Monthly downloads | Zenodo |
|:------------------------------------------------------------------------------------------------------|--------:|--------:|:---------------|:-------------------|:--------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 133 | 20 | pecanpy | 157.0 | 617.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 146 | 21 | pecanpy | 233.0 | 946.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [teaching](https://github.com/krishnanlab/teaching) | 23 | 19 | - | - | - | - |
| [txt2onto](https://github.com/krishnanlab/txt2onto) | 23 | 5 | - | - | - | - |
| [obnb](https://github.com/krishnanlab/obnb) | 18 | 0 | obnb | 5.0 | 22.0 | - |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 18 | 2 | geneplexus | 23.0 | 126.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 20 | 3 | geneplexus | 7.0 | 49.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) |
| [obnb](https://github.com/krishnanlab/obnb) | 20 | 0 | obnb | 5.0 | 18.0 | - |
| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 10 | 3 | - | - | - | - |
| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 10 | 3 | - | - | - | - |
| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 9 | 3 | - | - | - | - |
| [Expresto](https://github.com/krishnanlab/Expresto) | 6 | 4 | - | - | - | - |
| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 5 | 0 | - | - | - | - |
| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 3 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) |
| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 3.0 | 34.0 | - |
| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - |
| [geneplexus-app-v2](https://github.com/krishnanlab/geneplexus-app-v2) | 2 | 0 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 2 | 0 | cone | 8.0 | 31.0 | - |
| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - |
| [obnbench](https://github.com/krishnanlab/obnbench) | 2 | 0 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) |
| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 9.0 | 39.0 | - |
| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 2 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) |
| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - |
| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - |
| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - |
| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 1 | 0 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 1 | 0 | cone | 15.0 | 42.0 | - |
| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - |
| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 0 | 0 | - | - | - | - |
| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 1 | 0 | - | - | - | - |
| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - |
| [simplex](https://github.com/krishnanlab/simplex) | 0 | 0 | - | - | - | - |
| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 0 | 0 | - | - | - | - |
| [NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval) | 0 | 0 | - | - | - | - |
| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - |
| [gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend) | 0 | 0 | - | - | - | - |
| [Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code) | 0 | 0 | - | - | - | - |
| [gene-plexus](https://github.com/krishnanlab/gene-plexus) | 0 | 0 | - | - | - | - |
| [.github](https://github.com/krishnanlab/.github) | 0 | 0 | - | - | - | - |
| [SNNomics](https://github.com/krishnanlab/SNNomics) | 0 | 0 | - | - | - | - |

Last updated: 2024-02-01
Last updated: 2024-06-01
29 changes: 29 additions & 0 deletions software_info/hist/2024-06-01.csv
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@@ -0,0 +1,29 @@
,Name,Stars,Forks,Package name,Weekly downloads,Monthly downloads,Zenodo
0,[PecanPy](https://github.com/krishnanlab/PecanPy),146,21,pecanpy,233.0,946.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437)
1,[teaching](https://github.com/krishnanlab/teaching),23,19,-,-,-,-
2,[txt2onto](https://github.com/krishnanlab/txt2onto),23,5,-,-,-,-
3,[PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus),20,3,geneplexus,7.0,49.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205)
4,[obnb](https://github.com/krishnanlab/obnb),20,0,obnb,5.0,18.0,-
5,[GenePlexus](https://github.com/krishnanlab/GenePlexus),10,3,-,-,-,-
6,[RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression),10,3,-,-,-,-
7,[Expresto](https://github.com/krishnanlab/Expresto),6,4,-,-,-,-
8,[PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks),5,0,-,-,-,-
9,[node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks),3,1,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164)
10,[pydab](https://github.com/krishnanlab/pydab),2,0,pydab,3.0,34.0,-
11,[MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics),2,1,-,-,-,-
12,[geneplexus-app-v2](https://github.com/krishnanlab/geneplexus-app-v2),2,0,-,-,-,-
13,[cone](https://github.com/krishnanlab/cone),2,0,cone,8.0,31.0,-
14,[talks](https://github.com/krishnanlab/talks),2,3,-,-,-,-
15,[obnbench](https://github.com/krishnanlab/obnbench),2,0,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270)
16,[ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016),1,0,-,-,-,-
17,[chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation),1,0,-,-,-,-
18,[geneplexus_app](https://github.com/krishnanlab/geneplexus_app),1,0,-,-,-,-
19,[simplex](https://github.com/krishnanlab/simplex),0,0,-,-,-,-
20,[GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript),0,0,-,-,-,-
21,[NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval),0,0,-,-,-,-
22,[ECRE_student](https://github.com/krishnanlab/ECRE_student),0,0,-,-,-,-
23,[gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend),0,0,-,-,-,-
24,[Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code),0,0,-,-,-,-
25,[gene-plexus](https://github.com/krishnanlab/gene-plexus),0,0,-,-,-,-
26,[.github](https://github.com/krishnanlab/.github),0,0,-,-,-,-
27,[SNNomics](https://github.com/krishnanlab/SNNomics),0,0,-,-,-,-