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Automated software info update #6

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14 changes: 7 additions & 7 deletions software_info/README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -5,24 +5,24 @@ KrishnanLab GitHub organization.

| Name | Stars | Forks | Package name | Weekly downloads | Monthly downloads | Zenodo |
|:------------------------------------------------------------------------------------------------------|--------:|--------:|:---------------|:-------------------|:--------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 133 | 20 | pecanpy | 157.0 | 617.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 140 | 21 | pecanpy | 251.0 | 955.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [teaching](https://github.com/krishnanlab/teaching) | 23 | 19 | - | - | - | - |
| [txt2onto](https://github.com/krishnanlab/txt2onto) | 23 | 5 | - | - | - | - |
| [obnb](https://github.com/krishnanlab/obnb) | 18 | 0 | obnb | 5.0 | 22.0 | - |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 18 | 2 | geneplexus | 23.0 | 126.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) |
| [obnb](https://github.com/krishnanlab/obnb) | 18 | 0 | obnb | 10.0 | 23.0 | - |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 18 | 2 | geneplexus | 4.0 | 62.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) |
| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 10 | 3 | - | - | - | - |
| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 9 | 3 | - | - | - | - |
| [Expresto](https://github.com/krishnanlab/Expresto) | 6 | 4 | - | - | - | - |
| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 5 | 0 | - | - | - | - |
| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 2 | 0 | cone | 4.0 | 30.0 | - |
| [obnbench](https://github.com/krishnanlab/obnbench) | 2 | 0 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) |
| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 9.0 | 39.0 | - |
| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 6.0 | 35.0 | - |
| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 2 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) |
| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - |
| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - |
| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - |
| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 1 | 0 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 1 | 0 | cone | 15.0 | 42.0 | - |
| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - |
| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - |
| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 0 | 0 | - | - | - | - |
| [simplex](https://github.com/krishnanlab/simplex) | 0 | 0 | - | - | - | - |
Expand All @@ -32,4 +32,4 @@ KrishnanLab GitHub organization.
| [gene-plexus](https://github.com/krishnanlab/gene-plexus) | 0 | 0 | - | - | - | - |
| [.github](https://github.com/krishnanlab/.github) | 0 | 0 | - | - | - | - |

Last updated: 2024-02-01
Last updated: 2024-03-01
27 changes: 27 additions & 0 deletions software_info/hist/2024-03-01.csv
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@@ -0,0 +1,27 @@
,Name,Stars,Forks,Package name,Weekly downloads,Monthly downloads,Zenodo
0,[PecanPy](https://github.com/krishnanlab/PecanPy),140,21,pecanpy,251.0,955.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437)
1,[teaching](https://github.com/krishnanlab/teaching),23,19,-,-,-,-
2,[txt2onto](https://github.com/krishnanlab/txt2onto),23,5,-,-,-,-
3,[obnb](https://github.com/krishnanlab/obnb),18,0,obnb,10.0,23.0,-
4,[PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus),18,2,geneplexus,4.0,62.0,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205)
5,[RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression),10,3,-,-,-,-
6,[GenePlexus](https://github.com/krishnanlab/GenePlexus),9,3,-,-,-,-
7,[Expresto](https://github.com/krishnanlab/Expresto),6,4,-,-,-,-
8,[PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks),5,0,-,-,-,-
9,[talks](https://github.com/krishnanlab/talks),2,3,-,-,-,-
10,[cone](https://github.com/krishnanlab/cone),2,0,cone,4.0,30.0,-
11,[obnbench](https://github.com/krishnanlab/obnbench),2,0,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270)
12,[pydab](https://github.com/krishnanlab/pydab),2,0,pydab,6.0,35.0,-
13,[node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks),2,1,-,-,-,[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164)
14,[MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics),2,1,-,-,-,-
15,[geneplexus_app](https://github.com/krishnanlab/geneplexus_app),1,0,-,-,-,-
16,[GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript),1,0,-,-,-,-
17,[ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016),1,0,-,-,-,-
18,[ECRE_student](https://github.com/krishnanlab/ECRE_student),0,0,-,-,-,-
19,[chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation),0,0,-,-,-,-
20,[simplex](https://github.com/krishnanlab/simplex),0,0,-,-,-,-
21,[NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval),0,0,-,-,-,-
22,[gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend),0,0,-,-,-,-
23,[Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code),0,0,-,-,-,-
24,[gene-plexus](https://github.com/krishnanlab/gene-plexus),0,0,-,-,-,-
25,[.github](https://github.com/krishnanlab/.github),0,0,-,-,-,-