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Automated software info update #16

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36 changes: 20 additions & 16 deletions software_info/README.md
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Expand Up @@ -5,31 +5,35 @@ KrishnanLab GitHub organization.

| Name | Stars | Forks | Package name | Weekly downloads | Monthly downloads | Zenodo |
|:------------------------------------------------------------------------------------------------------|--------:|--------:|:---------------|:-------------------|:--------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 133 | 20 | pecanpy | 157.0 | 617.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [PecanPy](https://github.com/krishnanlab/PecanPy) | 157 | 22 | pecanpy | 411.0 | 1572.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6386437.svg)](https://doi.org/10.5281/zenodo.6386437) |
| [teaching](https://github.com/krishnanlab/teaching) | 23 | 19 | - | - | - | - |
| [txt2onto](https://github.com/krishnanlab/txt2onto) | 23 | 5 | - | - | - | - |
| [obnb](https://github.com/krishnanlab/obnb) | 18 | 0 | obnb | 5.0 | 22.0 | - |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 18 | 2 | geneplexus | 23.0 | 126.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.6383205.svg)](https://doi.org/10.5281/zenodo.6383205) |
| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 10 | 3 | - | - | - | - |
| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 9 | 3 | - | - | - | - |
| [txt2onto](https://github.com/krishnanlab/txt2onto) | 23 | 6 | - | - | - | - |
| [obnb](https://github.com/krishnanlab/obnb) | 21 | 1 | obnb | 19.0 | 57.0 | - |
| [PyGenePlexus](https://github.com/krishnanlab/PyGenePlexus) | 20 | 3 | geneplexus | 167.0 | 693.0 | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14149956.svg)](https://doi.org/10.5281/zenodo.14149956) |
| [RNAseq_coexpression](https://github.com/krishnanlab/RNAseq_coexpression) | 12 | 3 | - | - | - | - |
| [GenePlexus](https://github.com/krishnanlab/GenePlexus) | 10 | 3 | - | - | - | - |
| [Expresto](https://github.com/krishnanlab/Expresto) | 6 | 4 | - | - | - | - |
| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 5 | 0 | - | - | - | - |
| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - |
| [PecanPy_benchmarks](https://github.com/krishnanlab/PecanPy_benchmarks) | 6 | 0 | - | - | - | - |
| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 3 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) |
| [pydab](https://github.com/krishnanlab/pydab) | 3 | 0 | pydab | 19.0 | 68.0 | - |
| [obnbench](https://github.com/krishnanlab/obnbench) | 2 | 0 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8048305.svg)](https://doi.org/10.5281/zenodo.8048305)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8045270.svg)](https://doi.org/10.5281/zenodo.8045270) |
| [pydab](https://github.com/krishnanlab/pydab) | 2 | 0 | pydab | 9.0 | 39.0 | - |
| [node2vecplus_benchmarks](https://github.com/krishnanlab/node2vecplus_benchmarks) | 2 | 1 | - | - | - | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7573612.svg)](https://doi.org/10.5281/zenodo.7573612)[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7007164.svg)](https://doi.org/10.5281/zenodo.7007164) |
| [MCC-F1-Curve-and-Metrics](https://github.com/krishnanlab/MCC-F1-Curve-and-Metrics) | 2 | 1 | - | - | - | - |
| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - |
| [talks](https://github.com/krishnanlab/talks) | 2 | 3 | - | - | - | - |
| [geneplexus-app-v2](https://github.com/krishnanlab/geneplexus-app-v2) | 2 | 0 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 2 | 0 | cone | 34.0 | 111.0 | - |
| [ASD-gene-prediction-Krishnan2016](https://github.com/krishnanlab/ASD-gene-prediction-Krishnan2016) | 1 | 0 | - | - | - | - |
| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 1 | 0 | - | - | - | - |
| [cone](https://github.com/krishnanlab/cone) | 1 | 0 | cone | 15.0 | 42.0 | - |
| [geneplexus_app](https://github.com/krishnanlab/geneplexus_app) | 1 | 0 | - | - | - | - |
| [txt2onto2.0](https://github.com/krishnanlab/txt2onto2.0) | 1 | 1 | - | - | - | - |
| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 1 | 0 | - | - | - | - |
| [ECRE_student](https://github.com/krishnanlab/ECRE_student) | 0 | 0 | - | - | - | - |
| [chronic-inflammation](https://github.com/krishnanlab/chronic-inflammation) | 0 | 0 | - | - | - | - |
| [simplex](https://github.com/krishnanlab/simplex) | 0 | 0 | - | - | - | - |
| [NetworkLearningEval](https://github.com/krishnanlab/NetworkLearningEval) | 0 | 0 | - | - | - | - |
| [gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend) | 0 | 0 | - | - | - | - |
| [GenePlexusZoo-Mancusript](https://github.com/krishnanlab/GenePlexusZoo-Mancusript) | 0 | 0 | - | - | - | - |
| [Age-sex_signatures_in_humans_code](https://github.com/krishnanlab/Age-sex_signatures_in_humans_code) | 0 | 0 | - | - | - | - |
| [gp-gcp-frontend](https://github.com/krishnanlab/gp-gcp-frontend) | 0 | 0 | - | - | - | - |
| [gene-plexus](https://github.com/krishnanlab/gene-plexus) | 0 | 0 | - | - | - | - |
| [.github](https://github.com/krishnanlab/.github) | 0 | 0 | - | - | - | - |
| [SNNomics](https://github.com/krishnanlab/SNNomics) | 0 | 0 | - | - | - | - |
| [microbiome-metadata-annotation](https://github.com/krishnanlab/microbiome-metadata-annotation) | 0 | 0 | - | - | - | - |

Last updated: 2024-02-01
Last updated: 2025-01-01
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