NetworkRewiring

R package for quantiying pathway perturbations in gene co-expression networks.

Features

• Preprocessing gene co-expression data.
• Compute gene co-expression networks defined as pathway specific biological processes obtained from KEGG and GO databases.
• Compute network rewiring scores and generate pathway specific summary statistics (indicating pathway perturbations).

License

CC BY-NC 4.0 License

Installation

# install.packages("devtools")
# library(devtools)
# devtools::install_github("kiakoudimi/NetworkRewiring")