Try to automatically convert from CIGARs v1.4 to v1.3 format #147
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Iterate over all input files while increasing internal counters and after that print out the statistics.
One can use the full version of rtg-tools (called rtg-core) or use reformat.sh wrapper from Brian Bushnell's BBmap bundle. The patch is untested but passes 'perl -w' checks.
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