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1. theislab/single-cell-best-practices theislab/single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.1k 255

2. cellmapslab/kimono cellmapslab/kimono Public

   KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-pr…

   R 9 3

3. tidyomics/omicslog tidyomics/omicslog Public

   Log operations of R omic analyses

   R 2 1

4. gibbslab/coexnet gibbslab/coexnet Public

   An R package to build CO-EXpression NETworks from Microarray Data

   R 1 1

5. comp_bio_template comp_bio_template Public template

   Dockerfile

6. MangiolaLaboratory/cellNexusPy MangiolaLaboratory/cellNexusPy Public

   cellNexus: Quality control, annotation, aggregation and analytical layers for the Human Cell Atlas data

   Jupyter Notebook