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36 changes: 22 additions & 14 deletions meshmode/discretization/connection/direct.py
Original file line number Diff line number Diff line change
Expand Up @@ -250,28 +250,36 @@ def _resample_point_pick_indices(self, actx: ArrayContext,
:class:`pyopencl.array.Array` containing the index subset.
"""

mat = actx.to_numpy(actx.thaw(
self._resample_matrix(actx, to_group_index, ibatch_index)))

nrows, ncols = mat.shape
result = np.zeros(nrows, dtype=self.to_discr.mesh.element_id_dtype)
ibatch = self.groups[to_group_index].batches[ibatch_index]
from_grp = self.from_discr.groups[ibatch.from_group_index]

if tol_multiplier is None:
tol_multiplier = 50

tol = np.finfo(mat.dtype).eps * tol_multiplier
tol = np.finfo(ibatch.result_unit_nodes.dtype).eps * tol_multiplier

for irow in range(nrows):
one_indices, = np.where(np.abs(mat[irow] - 1) < tol)
zero_indices, = np.where(np.abs(mat[irow]) < tol)
dim, ntgt_nodes = ibatch.result_unit_nodes.shape
if dim == 0:
assert ntgt_nodes == 1
return actx.freeze(actx.from_numpy(np.array([0], dtype=np.int32)))

if len(one_indices) != 1:
return None
if len(zero_indices) != ncols - 1:
dist_vecs = (ibatch.result_unit_nodes.reshape(dim, -1, 1)
- from_grp.unit_nodes.reshape(dim, 1, -1))
dists = np.sqrt(np.sum(dist_vecs**2, axis=0))

result = np.zeros(ntgt_nodes, dtype=self.to_discr.mesh.element_id_dtype)

if tol_multiplier is None:
tol_multiplier = 500

for irow in range(ntgt_nodes):
close_indices, = np.where(dists[irow] < tol)

if len(close_indices) != 1:
return None

one_index, = one_indices
result[irow] = one_index
close_index, = close_indices
result[irow] = close_index

return actx.freeze(actx.from_numpy(result))

Expand Down
43 changes: 42 additions & 1 deletion meshmode/discretization/connection/opposite_face.py
Original file line number Diff line number Diff line change
Expand Up @@ -193,7 +193,7 @@ def get_map_jacobian(unit_nodes):
df_inv_resid[1] = 1/det * (-ata[0, 1] * atb[0] + ata[0, 0]*atb[1])

else:
# The boundary of a 3D mesh is 2D, so that's the
# The boundary of a 3D mesh is 2D, so that (the case right above) is the
# highest-dimensional case we genuinely care about.
#
# This stinks, performance-wise, because it's not vectorized.
Expand Down Expand Up @@ -222,6 +222,47 @@ def get_map_jacobian(unit_nodes):
max_resid = np.max(np.abs(resid))

if max_resid < tol:
if 0:
near_zero = np.abs(src_unit_nodes) < 1e-5
near_one = np.abs(src_unit_nodes-1) < 1e-5
near_mone = np.abs(src_unit_nodes+1) < 1e-5
reasonable = near_zero | near_one | near_mone
if np.any(~reasonable):
unreasonable_els, unreasonable_nodes = np.where(
np.any(~reasonable, axis=0))
mapped = apply_map(src_unit_nodes)
# print(src_unit_nodes[~reasonable])
urel = unreasonable_els[0]
tgt_urel = tgt_bdry_nodes[:, urel]
src_urel = src_bdry_nodes[:, urel]

dist_vecs = tgt_urel.reshape(3, -1, 1) - src_urel.reshape(3, 1, -1)
dists = np.sqrt(np.sum(dist_vecs**2, axis=0))

mat = (dists < 1e-12)
from_indices = np.array([np.where(row)[0][0] for row in mat])

sunodes = src_bdry_discr.groups[i_src_grp].unit_nodes

print("GOOD UNIT NODES")
print(sunodes[:, from_indices])
print("BAD UNIT NODES")
print(src_unit_nodes[:, urel])
print()

fixed_src_unit_nodes = src_unit_nodes.copy()
fixed_src_unit_nodes[:, urel] = sunodes[:, from_indices]
mapped_fixed = apply_map(fixed_src_unit_nodes)

print("FIXED RESIDUAL")
print(np.max(np.abs(mapped_fixed[:, urel]
- tgt_bdry_nodes[:, urel])))
print("UNFIXED RESIDUAL")
print(np.max(np.abs(mapped[:, urel] - tgt_bdry_nodes[:, urel])))


pu.db

logger.debug("_make_cross_face_batches: gauss-newton: done, "
"final residual: %g", max_resid)
break
Expand Down
18 changes: 11 additions & 7 deletions meshmode/mesh/generation.py
Original file line number Diff line number Diff line change
Expand Up @@ -1193,13 +1193,17 @@ def generate_warped_rect_mesh(dim, order, *, nelements_side=None,

def m(x):
result = np.empty_like(x)
result[0] = (
1.5*x[0] + np.cos(x[0])
+ 0.1*np.sin(10*x[1]))
result[1] = (
0.05*np.cos(10*x[0])
+ 1.3*x[1] + np.sin(x[1]))
if len(x) == 3:
if len(x) >= 2:
result[0] = (
1.5*x[0] + np.cos(x[0])
+ 0.1*np.sin(10*x[1]))
result[1] = (
0.05*np.cos(10*x[0])
+ 1.3*x[1] + np.sin(x[1]))
else:
result[0] = 1.5*x[0] + np.cos(x[0])

if len(x) >= 3:
result[2] = x[2] + np.sin(x[0] / 2) / 2
return result

Expand Down
109 changes: 109 additions & 0 deletions test/test_connection.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,109 @@
__copyright__ = "Copyright (C) 2020 Andreas Kloeckner"

__license__ = """
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
"""

from arraycontext import _acf # noqa: F401
from functools import partial
import numpy as np # noqa: F401
import numpy.linalg as la # noqa: F401

import meshmode # noqa: F401
from arraycontext import ( # noqa
pytest_generate_tests_for_pyopencl_array_context
as pytest_generate_tests)

from meshmode.mesh import SimplexElementGroup, TensorProductElementGroup
from meshmode.discretization.poly_element import (
PolynomialWarpAndBlendGroupFactory,
PolynomialEquidistantSimplexGroupFactory,
LegendreGaussLobattoTensorProductGroupFactory,
PolynomialRecursiveNodesGroupFactory,
)
from meshmode.discretization import Discretization
from meshmode.discretization.connection import FACE_RESTR_ALL
import meshmode.mesh.generation as mgen

import pytest

import logging
logger = logging.getLogger(__name__)


def connection_is_permutation(actx, conn):
for i_tgrp, cgrp in enumerate(conn.groups):
for i_batch, batch in enumerate(cgrp.batches):
if not len(batch.from_element_indices):
continue

point_pick_indices = conn._resample_point_pick_indices(
actx, i_tgrp, i_batch)

if point_pick_indices is None:
return False

return True


@pytest.mark.parametrize("group_factory", [
PolynomialWarpAndBlendGroupFactory,
PolynomialEquidistantSimplexGroupFactory,
LegendreGaussLobattoTensorProductGroupFactory,
partial(PolynomialRecursiveNodesGroupFactory, family="lgl"),
])
@pytest.mark.parametrize("dim", [2, 3])
@pytest.mark.parametrize("order", [1, 2, 3, 4, 5])
def test_bdry_restriction_is_permutation(actx_factory, group_factory, dim, order):
"""Check that restriction to the boundary and opposite-face swap
for the element groups, orders and dimensions above is actually just
indirect access.
"""
actx = actx_factory()

if group_factory is LegendreGaussLobattoTensorProductGroupFactory:
group_cls = TensorProductElementGroup
else:
group_cls = SimplexElementGroup

mesh = mgen.generate_warped_rect_mesh(dim, order=order, n=5,
group_cls=group_cls)

vol_discr = Discretization(actx, mesh, group_factory(order))
from meshmode.discretization.connection import (
make_face_restriction, make_opposite_face_connection)
bdry_connection = make_face_restriction(
actx, vol_discr, group_factory(order),
FACE_RESTR_ALL)

assert connection_is_permutation(actx, bdry_connection)

opp_face = make_opposite_face_connection(actx, bdry_connection)
assert connection_is_permutation(actx, opp_face)


if __name__ == "__main__":
import sys
if len(sys.argv) > 1:
exec(sys.argv[1])
else:
from pytest import main
main([__file__])

# vim: fdm=marker