VRE WfExS Tool Executor

Requirements

• Python 3.6 or later
• git
• singularity

sudo apt update
sudo apt install python3
sudo apt install git

In order to install the Python dependencies you need pip and venv modules.

sudo apt install python3-pip python3-venv

Installation

Directly from GitHub:

cd $HOME
git clone https://github.com/inab/vre_WfExS_executor.git
cd vre_container_executor

Create the Python environment:

python3 -m venv venv
source venv/bin/activate
pip install --upgrade wheel
pip install -r requirements.txt

Run the Wrapper

First, go to tests/basic/ to change config.json and in_metadata.json files.

./VRE_RUNNER --config tests/basic/config.json --in_metadata tests/basic/in_metadata.json --out_metadata out_metadata.json --log_file VRE_RUNNER.log

License

• © 2020-2021 Barcelona Supercomputing Center (BSC), ES

Licensed under the Apache License, version 2.0 https://www.apache.org/licenses/LICENSE-2.0, see the file LICENSE.txt for details.