Conda tut 0

.gitmodules

@@ -1,9 +1,13 @@
 [submodule "test/bats"]
 	path = test/bats
 	url = https://github.com/bats-core/bats-core.git
+	branch = master
 [submodule "test/test_helper/bats-support"]
 	path = test/test_helper/bats-support
 	url = https://github.com/bats-core/bats-support.git
+	branch = master
 [submodule "test/test_helper/bats-assert"]
 	path = test/test_helper/bats-assert
 	url = https://github.com/bats-core/bats-assert.git
+	branch = master
+

devcontainers/conda-jupyter-node/README.md

@@ -0,0 +1,15 @@
+# Conda Juptyer Node
+* 
+```bash
+cd devcontainers/conda-jupyter-node
+code devcontainers/conda-jupyter-node
+```
+```bash
+docker compose -f ./docker/docker-compose.yml up -d # detached
+docker compose -f ./docker/docker-compose.yml up -d --build # 
+
+docker compose -f ./docker/docker-compose.yml start
+docker compose -f ./docker/docker-compose.yml attach webapp # will kill if exit
+
+docker compose -f ./docker/docker-compose.yml exec webapp /bin/zsh
+```

devcontainers/conda-jupyter-node/docker/Dockerfile

@@ -0,0 +1,39 @@
+FROM debian:bookworm-slim
+# https://docs.docker.com/reference/dockerfile/
+
+# known dependencies: curl
+# dev dependencies: zsh tree tldr git wget
+# omz: git ca-certificates procps (ps)
+RUN apt-get update && apt-get install -y \
+  curl \
+  zsh tree wget git ca-certificates procps tar bzip2 \
+  && rm -rf /var/lib/apt/lists/*
+# rm -rf /var/lib/apt/lists/* is to clean up after apt-get
+# maybe add tmux etc. only
+
+# assume mounted docker to /webapp using compose
+SHELL ["/bin/bash", "-c"]
+
+# won't actually mount anything. it's for documentation
+VOLUME ["/webapp"]
+WORKDIR /webapp
+# COPY . /webapp
+# using compose to mount
+# copy lib over for zsh? or nah
+# default port for jupterlab
+EXPOSE 8888
+
+HEALTHCHECK --interval=5m --timeout=3s \
+  CMD set -euxo pipefail; printenv SHELL | grep -i zsh ; \
+  curl -f http://localhost:8888/ || exit 1
+
+# entrypoint if mounting using compose has to be in compose
+# ENTRYPOINT [ "./entrypoints/smoke-tests.sh" ]
+# cmd is also overided by compose since entrypoint was declared there
+SHELL ["/bin/zsh", "-c"]
+ENV SHELL=/usr/bin/zsh
+ENV LANG=en_CA.UTF-8
+ENV TERM=xterm-256color
+COPY ./lib/*.sh ./lib/
+RUN set -x ; chsh -s $(which zsh) && ./lib/readme_zsh_plugin_copy.md.sh
+CMD /bin/zsh

devcontainers/conda-jupyter-node/docker/docker-compose.override.yml

@@ -0,0 +1,11 @@
+# Docker Compose for mounting volumes during build
+version: "3.8"
+services:
+  webapp:
+    # entrypoint: ./entrypoints/smoke-tests.sh # defn worked
+    entrypoint: ./entrypoints/labs/conda-micromamba.sh
+
+
+    # ports is it annray... gest appendd
+    # ports:
+    #   - "8888:8888"

devcontainers/conda-jupyter-node/docker/docker-compose.yml

@@ -0,0 +1,26 @@
+# Docker Compose for mounting volumes during build
+version: "3.8"
+name: conda-jupyter-node
+# i guess proper name would be conda-node-jupyter so
+# compose would auto append
+services:
+  webapp:
+    # comment out to skip build
+    # called docker-webapp for some reason
+    container_name: jupyter-webapp
+    hostname: jupyter-webapp
+    # for dev: maybe should add a dev env file
+    stdin_open: true # docker run -i. needed until a service is running
+    tty: true        # docker run -t. instead of bash... cuz bash is not a service
+
+    build: 
+      context: .
+      dockerfile: ./Dockerfile
+    entrypoint: ./entrypoints/smoke-tests.sh # defn worked
+    command: /bin/zsh # since entrypoint is defined
+    # image: jchan48h/conda-jupyter-node
+    volumes:
+      - .:/webapp
+
+    ports:
+      - "8888:8888"

devcontainers/conda-jupyter-node/docker/entrypoints/labs/conda-micromamba.sh

@@ -0,0 +1,12 @@
+#!/usr/bin/env bash
+## note entry points run everytime the container starts
+set -euxo pipefail
+USER=${USERNAME:-root}
+cat /etc/os-release | grep ID # ID=debian
+printenv | grep -i home
+getent passwd $USER | head -n 1 | cut -d: -f7 # check which is the default shell
+getent passwd $USER | head -n 1 | cut -d: -f7 | grep -i zsh
+printenv SHELL | grep -i zsh
+
+
+exec "$@"

devcontainers/conda-jupyter-node/docker/entrypoints/smoke-tests.sh

@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+## note entry points run everytime the container starts
+set -euxo pipefail
+# LOGNAME=root
+# USER=${USERNAME:LOGNAME:-root}
+USER=${USERNAME:-root}
+# USER=${LOGNAM:-root}
+cat /etc/os-release | grep ID # ID=debian
+printenv | grep -i home
+getent passwd $USER | head -n 1 | cut -d: -f7 # check which is the default shell
+getent passwd $USER | head -n 1 | cut -d: -f7 | grep -i zsh
+printenv SHELL | grep -i zsh
+# doesn't need to be bash even
+# using healthcheck as well
+# lib/readme_zsh_plugin_copy.md.sh
+
+exec "$@"

devcontainers/conda-jupyter-node/docker/lib/readme_micromamba_conda_install.md.zsh

@@ -0,0 +1,77 @@
+#!/usr/bin/env zsh
+set -euxo pipefail
+
+# copied
+# Checks if packages are installed and installs them if not
+check_packages() {
+	if ! dpkg -s "$@" >/dev/null 2>&1; then
+		if [ "$(find /var/lib/apt/lists/* | wc -l)" = "0" ]; then
+			echo "Running apt-get update..."
+			apt-get update -y
+		fi
+		apt-get -y install --no-install-recommends "$@"
+	fi
+}
+
+cd $HOME
+# mkdir -p $HOME/bin
+# curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest
+# https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html#linux-and-macos
+# apt update # needed bzip2
+# apt install -y bzip2
+curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj bin/micromamba
+# curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj -C bin/micromamba
+eval "$(./bin/micromamba shell hook -s posix)"
+# assuming zsh... should maybe should change that
+./bin/micromamba shell init -s zsh -p ~/micromamba
+source ~/.zshrc
+alias conda=micromamba
+
+# set default
+micromamba config append channels conda-forge
+micromamba config set channel_priority strict
+
+# this might not work... because it might create a new shell
+# right... that's why i think the instructions told us to use the bin
+micromamba activate  # this activates the base environment
+micromamba create -y --name 311 python=3.11 pipx poetry
+micromamba activate 311
+micromamba create -y --name 312 python=3.12 pipx poetry
+micromamba activate 312
+
+pipx install pipx
+pipx ensurepath
+pipx completion
+
+conda install -y jupyterlab nodejs
+
+# conda env export --no-prefix > environment.yml
+# conda env export > environment.yml
+# conda env export
+conda env export --from-history
+# node --version
+# this is going to take a bit of time to try...
+
+# should check if it set
+exit 0
+/webapp/tests/smoke-test-0.sh
+./lib/readme_micromamba_conda_install.md.zsh
+###### jupyter lab --no-browser
+jupyter lab
+jupyter lab --no-browser
+jupyter lab --no-browser --allow-root
+
+
+# figure out later
+# jupyter lab --no-browser --allow-root --no-token
+jupyter lab --help-all |grep -i token
+jupyter lab --help-all |grep -i no
+jupyter lab --help-all |grep -i pass
+jupyter lab --help-all |grep -i auth
+
+### conda aliased
+conda env list
+# use port forward
+# localhost:8888
+# by attaching if forgot
+# file:///root/.local/share/jupyter/runtime/jpserver-4201-open.html

devcontainers/conda-jupyter-node/docker/lib/readme_zsh_plugin_copy.md

@@ -0,0 +1,103 @@
+# Useful stuff
+* should have the command to download these two files
+* and run
+* `check_packages`
+  * it's legit
+  * it checks the lists before doing apt update
+  * but it should probably clean up after itself being inside of a docker
+
+## zsh plugins
+* https://github.com/zsh-users?q=&type=all&language=&sort=
+  * omz plugins are here
+* plugins are the official ones?
+  * https://github.com/ohmyzsh/ohmyzsh/wiki/Plugins
+
+# Check Shell
+```bash
+cat /etc/shells
+printenv SHELL
+echo $SHELL
+getent passwd $USER | cut -d: -f7
+getent passwd $USER | cut -d: -f7 | head -n 1 # probably most accurate one
+getent passwd $USER |grep -i zsh #aaaa 
+getent passwd $USER | head -n 1 | cut -d: -f7 # this ? unless it's different shoudl try
+# after set
+SHELL=/usr/bin/zsh
+chsh -s $(which zsh)
+chsh -s /usr/bin/zsh
+# set -x is to print each command. set +x
+set +x
+echo chsh -s $(which zsh)
+set -x ; chsh -s $(which zsh)
+ps -p $$ #
+# interesting
+# install ps
+apt install procps
+sudo apt-get update && apt-get install -y procps
+
+# optional installs
+# or i should have slim and non slim?
+# feels more liek a packer thing here
+```
+
+# todo
+* [ ] add sudo
+* [ ] rsync?
+
+# Schema here
+```jsonc
+{
+  "name": "ZSH Plugins",
+  "id": "zsh-plugins",
+  "version": "0.0.4",
+  "description": "Install (Oh-My-)ZSH plugins",
+  "documentationURL": "http://github.com/devcontainers-contrib/features/tree/main/src/zsh-plugins",
+  "installsAfter": [
+    "ghcr.io/devcontainers/features/common-utils",
+    "ghcr.io/devcontainers/features/git"
+  ],
+  "options": {
+    "plugins": {
+      "type": "string",
+      "default": "",
+      "proposals": [
+        "ssh-agent npm"
+      ],
+      "description": "Space separated list of ZSH plugin names that will be added to .zshrc"
+    },
+    "omzPlugins": {
+      "type": "string",
+      "default": "",
+      "proposals": [
+        "https://github.com/zsh-users/zsh-autosuggestions"
+      ],
+      "description": "Space separated list of Oh-My-ZSH custom plugin Git URLs that will be cloned"
+    },
+    "username": {
+      "type": "string",
+      "default": "",
+      "proposals": [
+        "root",
+        "node",
+        "vscode"
+      ],
+      "description": "For which user to setup ZSH plugins, by default uses 'remoteUser' or 'containerUser' from config"
+    }
+  }
+}
+```
+```bash
+#!/usr/bin/env bash
+# my install and experiment
+# check envs
+printenv USERNAME
+printenv $_REMOTE_USER
+printenv _REMOTE_USER
+printenv USER
+echo $USER
+
+export USERNAME=${USERNAME:-root}
+printenv USERNAME
+unset USERNAME
+
+```