Add pseudo-spectral discretisation and use Catalyst's spatial reaction interface.#61
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Homo-carbonis wants to merge 158 commits intohiscocklab:masterfrom
Open
Add pseudo-spectral discretisation and use Catalyst's spatial reaction interface.#61Homo-carbonis wants to merge 158 commits intohiscocklab:masterfrom
Homo-carbonis wants to merge 158 commits intohiscocklab:masterfrom
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This has all the new code needed to use the new pseudo-spectral solver and the Catalyst interface for diffusion parameters. I've also refactored the code slightly to make it a bit easier to extend and updated the documentation.
Major Changes
simulateyou can choose eitherdiscretisation=:pseudospectral(the default) ordiscretisation=:finitedifferenceto use the finite difference method provided by Catalyst.Catalyst .SpatialReactionobjects which associate diffusion parameters with reactants.Modelobject which contains a complete description of the system apart from the parameter values.(:a => [0.3], :b => range(0.0,3.0,4) :Dᵥ => [50.0])