DeepFRET-Model

Repository for the model training.

Original Repo with ongoing development: here

To reproduce publication model:

Make sure your environment reflects requirement.txt
Run generate_data.py and input the number of traces (we used 250k initially, which ends up being ~150k after balancing)
Run train_model.py. Be sure to set exclude_alex_fret=False for the full model.

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
data		data
lib		lib
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
README.md~		README.md~
generate_data.py		generate_data.py
gpu_to_cpu_model.ipynb		gpu_to_cpu_model.ipynb
inspect_trace.py		inspect_trace.py
requirements.txt		requirements.txt
train_model.ipynb		train_model.ipynb
train_model.py		train_model.py
validate_model.py		validate_model.py