Use pyproject.toml

.github/workflows/test_suite.yaml

@@ -11,7 +11,6 @@ on:
 
 jobs:
   tests:
-    if: "!contains(github.event.pull_request.labels.*.name, 'auto-pr')"
     env:
       ENV_NAME: tests
       PYTHON: ${{ matrix.python-version }}
@@ -23,26 +22,31 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: [3.9, "3.10", "3.11", "3.12"]
+        python-version: ["3.12", "3.13", "3.14"]
     steps:
       - uses: actions/checkout@master
         with:
           fetch-depth: 1
       - uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
+        with:
+          enable-cache: true
+
       - uses: fortran-lang/setup-fortran@v1
         id: setup-fortran
         with:
           compiler: gcc
           version: 13
       - name: Install
-        run:  pip install .[dev]
+        run:  uv sync --locked --all-extras --dev
       - name: Run Tests
         run: |
-          python -m pytest --cov=hmf --cov-config=.coveragerc --cov-report xml:./coverage.xml --durations=25
+          uv run pytest --cov-report xml:./coverage.xml --durations=25
       - uses: codecov/codecov-action@v5
-        if: matrix.os == 'ubuntu-latest' && success() && !contains(github.event.pull_request.labels.*.name, 'auto-pr')
+        if: matrix.os == 'ubuntu-latest' && success()
         with:
           files: ./coverage.xml # optional
           fail_ci_if_error: true

.github/workflows/warnings-tests.yaml

@@ -22,24 +22,29 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest]
-        python-version: ["3.12"]
+        python-version: ["3.14"]
     steps:
       - uses: actions/checkout@master
         with:
           fetch-depth: 1
       - uses: actions/setup-python@v6
         with:
           python-version: ${{ matrix.python-version }}
+      - name: Install uv
+        uses: astral-sh/setup-uv@v7
+        with:
+          enable-cache: true
+
       - uses: fortran-lang/setup-fortran@v1
         id: setup-fortran
         with:
           compiler: gcc
           version: 13
       - name: Install
-        run:  pip install .[dev]
+        run:  uv sync --locked --all-extras --dev
       - name: Run Tests
         run: |
-          python -m pytest -Werror --cov=hmf --cov-config=.coveragerc --cov-report xml:./coverage.xml --durations=25
+          uv run pytest -Werror --cov-report xml:./coverage.xml --durations=25
       - uses: codecov/codecov-action@v5
         if: matrix.os == 'ubuntu-latest' && success()
         with:

.pre-commit-config.yaml

@@ -17,36 +17,21 @@ repos:
   - id: requirements-txt-fixer
   - id: mixed-line-ending
     args: ['--fix=no']
--   repo: https://github.com/PyCQA/flake8
-    rev: '7.3.0'  # pick a git hash / tag to point to
-    hooks:
-    -   id: flake8
-        additional_dependencies:
-          - flake8-rst-docstrings
-          - flake8-docstrings
-          - flake8-builtins
-          - flake8-rst-docstrings
-          - flake8-rst
-          - flake8-markdown
-          - flake8-bugbear
-          - flake8-comprehensions
-          - flake8-print
-# Using this mirror lets us use mypyc-compiled black, which is about 2x faster
-- repo: https://github.com/psf/black-pre-commit-mirror
-  rev: 26.1.0
-  hooks:
-    - id: black
+
 - repo: https://github.com/pre-commit/pygrep-hooks
   rev: v1.10.0
   hooks:
   - id: rst-backticks
-- repo: https://github.com/PyCQA/isort
-  rev: 7.0.0
-  hooks:
-  - id: isort
 
-- repo: https://github.com/asottile/pyupgrade
-  rev: v3.21.2
+
+
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  # Ruff version.
+  rev: v0.14.14
   hooks:
-  - id: pyupgrade
-    args: [--py38-plus]
+    # Run the linter.
+    - id: ruff
+      args: [--fix]
+
+    # Run the formatter.
+    - id: ruff-format

.readthedocs.yml

@@ -13,7 +13,7 @@ conda:
   environment: docs/environment.yaml
 
 python:
-   version: 3.7
+   version: 3.13
    install:
       - method: pip
         path: .