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Bug: TypeError in jplace_utils.py due to invalid 'encoding' parameter in json.load()

bugUnexpected error raised? Weird results? Use this label.Unexpected error raised? Weird results? Use this label.

Status: Open.

#102 In hallamlab/TreeSAPP;

· SilentGene opened on Aug 27, 2025

Packages modified with treesapp package edit lineage_ids not compatiable withe treesapp evaluate

bugUnexpected error raised? Weird results? Use this label.Unexpected error raised? Weird results? Use this label.

Status: Open.

#101 In hallamlab/TreeSAPP;

· janstett opened on Oct 1, 2024

NCBI to GTDB lineage conversion

feature requestA request for a new feature unlike one that already existsA request for a new feature unlike one that already exists

Status: Open.

#100 In hallamlab/TreeSAPP;

· janstett opened on Oct 1, 2024

TreeSAPP classify bug for TaxIDs that have been merged

bugUnexpected error raised? Weird results? Use this label.Unexpected error raised? Weird results? Use this label.

Status: Open.

#99 In hallamlab/TreeSAPP;

· janstett opened on Oct 1, 2024

TreeSAPP Create Bug When Using Guarantee Flag

bugUnexpected error raised? Weird results? Use this label.Unexpected error raised? Weird results? Use this label.

Status: Open.

#98 In hallamlab/TreeSAPP;

· janstett opened on Oct 1, 2024

treesapp assign error

bugUnexpected error raised? Weird results? Use this label.Unexpected error raised? Weird results? Use this label.

Status: Open.

#96 In hallamlab/TreeSAPP;

· Cayna26 opened on Aug 21, 2023

Guarantee compatibility between reference package components and rank recommendation

feature requestA request for a new feature unlike one that already existsA request for a new feature unlike one that already exists

Status: Open.

#95 In hallamlab/TreeSAPP;

· cmorganl opened on Oct 9, 2022

Stitching fragmented ORFs

feature requestA request for a new feature unlike one that already existsA request for a new feature unlike one that already exists

Status: Open.

#91 In hallamlab/TreeSAPP;

· cmorganl opened on Mar 26, 2022

Getting error when running treesapp assign

Status: Open.

#89 In hallamlab/TreeSAPP;

· melodymale opened on Dec 19, 2021

Query sequence coverage for <code>treesapp abundance</code>

feature requestA request for a new feature unlike one that already existsA request for a new feature unlike one that already exists

Status: Open.

#88 In hallamlab/TreeSAPP;

· cmorganl opened on Jul 8, 2021

Split reference sequences into different fasta files by their annotation from <code>treesapp purity</code>

Status: Open.

#86 In hallamlab/TreeSAPP;

· cmorganl opened on Apr 27, 2021

Improve communication between purity and assign

enhancementHighlight something that could be improved. Please be specific, TreeSAPP isn't perfect.Highlight something that could be improved. Please be specific, TreeSAPP isn't perfect.

Status: Open.

#83 In hallamlab/TreeSAPP;

· cmorganl opened on Apr 10, 2021