adata_science_tools

data science tools that operate on anndata objects

Set up

clone the repo

git clone https://github.com/gitbenlewis/adata_science_tools.git

Make the conda environments

conda deactivate
conda remove -n not_base --all
conda env create -f config/env_not_base.yaml -n not_base
conda activate not_base

run the examples

conda activate not_base
bash example_PMID_33969320/scripts/000_run_everything.bash

Some example plots from example_PMID_33969320

Column plots

/adata_science_tools/_plotting/_column_plots.py view src file

barh_l2fc_dotplot()

View plot file