Applications upgrade

book/_toc.yml

@@ -1,12 +1,10 @@
-# Table of contents
-# Learn more at https://jupyterbook.org/customize/toc.html
-
 format: jb-book
 root: intro
+
 parts:
   - caption: Getting started
     chapters:
-    - file: content/applications/task01
+    - file: content/applications/general/simple
 
   - caption: Meshing
     chapters:
@@ -16,7 +14,7 @@ parts:
     - file: content/meshes/mesh_salome
 
   - caption: Materials
-    chapters: 
+    chapters:
     - file: content/material/material_basics
     - file: content/material/material_htm
     - file: content/material/material_advanced
@@ -31,14 +29,24 @@ parts:
     chapters:
     - file: content/temperatures/temperatures_basic
     - file: content/temperatures/temperatures_advanced
-    
+
   - caption: Applications
     chapters:
-    - file: content/applications/task02
-    - file: content/applications/task03
-    - file: content/applications/task04
-    - file: content/applications/task07
-    - file: content/applications/task08
-    - file: content/applications/task06
-    - file: content/applications/task10
-    - file: content/applications/microstructure
+      - file: content/applications/general/index
+    # General group
+        sections:
+          - file: content/applications/general/simple_permeation
+          - file: content/applications/general/permeation_barrier
+          - file: content/applications/general/heat_transfer
+          - file: content/applications/general/advection
+          - file: content/applications/general/monoblock
+    # Material science group
+      - file: content/applications/material_science/index
+        sections:
+          - file: content/applications/material_science/fittings_tds
+          - file: content/applications/material_science/microstructure
+      - file: content/applications/fusion/index
+    # Fusion group with nested sections
+        sections:
+          - file: content/applications/fusion/plasma
+          - file: content/applications/fusion/fuel_cycle/fuel_cycle_map

book/content/applications/fission/index.md

@@ -0,0 +1,15 @@
+---
+jupytext:
+  formats: ipynb,md:myst
+  text_representation:
+    extension: .md
+    format_name: myst
+    format_version: 0.13
+    jupytext_version: 1.18.1
+---
+
+# Fission #
+
+Modeling fission components with FESTIM
+
++++

book/content/applications/fusion/fuel_cycle/fuel_cycle_map.md

@@ -0,0 +1,31 @@
+---
+jupytext:
+  formats: ipynb,md:myst
+  text_representation:
+    extension: .md
+    format_name: myst
+    format_version: 0.13
+    jupytext_version: 1.18.1
+kernelspec:
+  display_name: festim-workshop
+  language: python
+  name: python3
+---
+
+# Fusion fuel cycle modeling #
+
+FESTIM can be used to model fusion fuel cycle components.
+
+* Fuel cycle components
+* System level modeling?
+
+```{code-cell} ipython3
+:tags: [hide-input]
+
+from IPython.display import HTML
+
+with open("test.svg") as f:
+    svg = f.read()
+
+HTML(svg)
+```

book/content/applications/fusion/index.md

@@ -0,0 +1,15 @@
+---
+jupytext:
+  formats: ipynb,md:myst
+  text_representation:
+    extension: .md
+    format_name: myst
+    format_version: 0.13
+    jupytext_version: 1.18.1
+---
+
+# Fusion #
+
+Modeling fusion components with FESTIM
+
++++