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1. gflownet-peptide gflownet-peptide Public

   GFlowNet-based therapeutic peptide design. Generates diverse, high-quality candidates (5.4x better diversity vs PPO/GRPO) to reduce correlated wet-lab failures. Published method with pre-trained mo…

   Python 3

2. agentic-drug-discovery-gaps agentic-drug-discovery-gaps Public

   Systematic evaluation of six agentic frameworks for drug discovery across peptide therapeutics, in vivo pharmacology, and resource-constrained settings

   TeX

3. protein-lm-distill protein-lm-distill Public

   Compact protein language models via knowledge distillation from ProtGPT2. 10-50x faster inference with maintained generation quality. Enables high-throughput screening workflows and secure on-premi…

   Python 1

4. cluspro-automation-py cluspro-automation-py Public

   Automated protein-protein docking pipeline for ClusPro. Batch submission, queue monitoring, results parsing, and GPCR topology-aware pose validation. Enables high-throughput virtual screening of pe…

   Python

5. icepop icepop Public

   Immune cell population analysis tool for estimating immune cell composition from gene expression data (DEGs or raw counts). Python CLI + web interface for deconvolution, visualization, and Circos p…

   Python

6. slidesort-bpr slidesort-bpr Public

   Reference-free detection of chromosomal breakpoints from NGS data. Identifies structural variations linked to cancer without reference genome dependency. Published in Bioinformatics (2014). Direct …

   R 2